1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gctagcaaatacctggttattaccttcaaggttttttcttactacttgttttattattgcataatgcttctgatttctagcacccattcactacctgcagGCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGCAGTTTGTCTGGTACGGTTGAAATCTGGACAGGGAATTTCAGTGCATGAT
species | Zea mays |
transcript | GRMZM2G135444_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGTGGTGGAAGAAATATTTGAAGATGGCTCTCCGATGCTTTCTAAAAG GCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGCEST: gi|148946427|gb|EC891736.2|EC891736
genomic: GATGTGGTGGAAGAAATATTTGAAGATGGCTCTCCGATGCTTTCTAAAAGgtgacatata ... ctacctgcagGCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGC
EST: GATGTGGTGGAAGAAATATTTGAAGATGGCTCTCCGATGCTTTCTAAAAG GCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGCEST: gi|149083525|gb|EE172857.2|EE172857
genomic: GATGTGGTGGAAGAAATATTTGAAGATGGCTCTCCGATGCTTTCTAAAAGgtgacatata ... ctacctgcagGCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGC
EST: GATGTGGTGGAAGAAATATTTGAAGATGGCTCTCCGATGCTTTCTAAAAG GCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGCEST: gi|149095946|gb|EE181612.2|EE181612
genomic: GATGTGGTGGAAGAAATATTTGAAGATGGCTCTCCGATGCTTTCTAAAAGgtgacatata ... ctacctgcagGCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGC
EST: GATGTGGTGGAAGAAATATTTGAAGATGGCTCTCCGATGCTTTCTAAAAG GCTAACTACCGGATATACACTTGAGAAAACTTTTGCCCCCTCCAGTTGTGC
genomic: GATGTGGTGGAAGAAATATTTGAAGATGGCTCTCCGATGCTTTCTAAAAGgtgacatata ... ctacctgcagGCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGC
ttgttttattattgcataatgcttctgatttctagcacccattcactacctgcagGCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGCAGTTTGTCTGGTACGGTTGAAATCTGGACAGGGAATTTCAGTGCATGAT
ttctgat putative branch site (score: 77)
ttattattgcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagcaaatacctggttattaccttcaaggttttttcttactacttgttttattattgcataatgcttctgatttctagcacccattcactacctgcagGCTAACTACCGGATATACACTTGAGAAAACTTTTGCACCCTCCAGTTGTGCAGTTTGTCTGGTACGGTTGAAATCTGGACAGGGAATTTCAGTGCATGAT
- - - - -tacctgg
- - - - - - - - - - -accttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -attgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattca