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...atttgtcactgtcatttctctttgtatggtaaacatattttgagatgaatcacactaacaccttactttctcctatgcttcatttgctacctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAAGTGCATATGCTCGGCTATATGATTATGACCGTATGCGGAAG
species | Zea mays |
transcript | GRMZM2G135283_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTACAGATTGCGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|211349901|gb|FL349172.1|FL349172
genomic: CTTACAGATTG-GATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|148973319|gb|EE024404.2|EE024404
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|149012532|gb|EE042603.2|EE042603
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|148946029|gb|EC891328.2|EC891328
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|149048905|gb|EE048404.2|EE048404
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|148958252|gb|EC904466.2|EC904466
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|211286148|gb|FL173729.1|FL173729
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: A-TGCCTTACAGATTGGATGAAAGCACTGGGAT-GATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGC-AAAGTTGAATCATGGCTGGTGCEST: gi|60351519|gb|DN218492.1|DN218492
genomic: AATGCCTTACAGATTGGATGAAAGCACTGG-ATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGA-TCATTGCTGGTGC
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|71299012|gb|DR785498.1|DR785498
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|148930308|gb|EE284699.2|EE284699
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|60346600|gb|DN213573.1|DN213573
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|67024112|gb|CO452861.1|CO452861
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|148969981|gb|EE020895.2|EE020895
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|149081312|gb|EE170425.2|EE170425
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|148947246|gb|EC892606.2|EC892606
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAANAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|149089957|gb|EE179246.2|EE179246
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAEST: gi|148945831|gb|EC891120.2|EC891120
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
EST: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAG TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
genomic: CAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattttcc ... ctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCA
tgaatcacactaacaccttactttctcctatgcttcatttgctacctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAAGTGCATATGCTCGGCTATATGATTATGACCGTATGCGGAAG
tatgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtcactgtcatttctctttgtatggtaaacatattttgagatgaatcacactaacaccttactttctcctatgcttcatttgctacctatgtatagTTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAAGTGCATATGCTCGGCTATATGATTATGACCGTATGCGGAAG
- - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - -acactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcta