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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggctgtgttttttctttacaatcgtattgcactgttccatgagctgttgttgcactgggatgccttgtttcatcaccatcctatgcttgtttaggcatgcttgtgcagatgcatgaagggtcctcttgtaatatttctctttaacttgcagGAGGCTAAAGAAGAAGCATTGGGTGATAGAGTGTGACCATCTTGTGCATGAGGGGTTTGAAAGCACT

Basic information

species Zea mays
transcript GRMZM2G135218_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135218_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 3'ss of exon 3
gtagggctgtgt-tttttctttacaatcgtattgcactgttccatgagctgt-tgttgca-ctgggatgccttgtttcatc-accatcctatgcttgtttaggcatgcttgtgcagatgcatgaagggtcctcttgtaatatttctctttaacttgcagGAGGCTAAAGAAGAAGCATTGGGTGATAGAGTGTGACCATCTTGTGCATGAGGGGTTTGAAAGCACT
||||||  |    || |||| |||  |    ||    ||  | |  |  ||  |||||   ||| |  |  |  |  |||| ||  | ||||| || |       |||||    ||||  | | ||  |  | |||| | |||| | ||| |  |||||||| || ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
gtagggtagcacgttcttctctactgtttacttttgttg--caaatacttgcatgttgtgtctgtgcagagtactcacatccacatttctatgattatc---atgtgcttacttagattgacgtaga-tatttttgtgacatttatgtttgatgtgcagGAGACTGAAGAAAAAGCACTGGGTGATAGAGTGTGACCCTCTTGTGCATGAGGGGTTTGAAAGCACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcttgtgcagatgcatgaagggtcctcttgtaatatttctctttaacttgcagGAGGCTAAAGAAGAAGCATTGGGTGATAGAGTGTGACCATCTTGTGCATGAGGGGTTTGAAAGCACT
                                          ctttaac  putative branch site (score: 3)
                                     tttctctttaactt  CT-rich tract
                                taatatttctctttaa  TA-rich tract