1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattctaacccgttcccgatatttcgtcgatttgacccctccttaaatcgctttgcactaaagaaacgatctatagGATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTCGTTTGGAGTCGTCACACTCAGGAGCAAGGCGATGCGTATGTACATATAT
species | Zea mays |
transcript | GRMZM2G135052_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCAT GATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTCEST: gi|60358163|gb|DN225136.1|DN225136
genomic: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCATgtaattctaa ... cgatctatagGATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTC
EST: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCAT GATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTCEST: gi|5361184|gb|AI795604.1|AI795604
genomic: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCATgtaattctaa ... cgatctatagGATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTC
EST: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCAT GATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTCEST: gi|32789971|gb|CD942207.1|CD942207
genomic: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCATgtaattctaa ... cgatctatagGATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTC
EST: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCAT GATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTCEST: gi|78021481|gb|DV489868.1|DV489868
genomic: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCATgtaattctaa ... cgatctatagGATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTC
EST: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCAT GATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTC
genomic: TCAAGCATGGATCAAAAGTCGGGCTCTTCCCGGGTTCATCTCCCGTTCATgtaattctaa ... cgatctatagGATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTC
tttcgtcgatttgacccctccttaaatcgctttgcactaaagaaacgatctatagGATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTCGTTTGGAGTCGTCACACTCAGGAGCAAGGCGATGCGTATGTACATATAT
cactaaa putative branch site (score: 46)
taaagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctaacccgttcccgatatttcgtcgatttgacccctccttaaatcgctttgcactaaagaaacgatctatagGATAACGAGCAAGTGAGAGAAGCAGCTGGCTGGCCTGAAGGCAAGAAGGTCGTTTGGAGTCGTCACACTCAGGAGCAAGGCGATGCGTATGTACATATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG