1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aatatttcttttcagcaatcattgtctcttttgtagggaaagtaggctgaacttcttgcttttctccacacatataataacagctgatttgtgtattcagATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTAATGATTTGACTCACTGGGACCTTACCTTCTGGAGTGAACGACTGAGAGA
species | Zea mays |
transcript | GRMZM2G133919_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAG ATATGGAAGATCTAAAAGTYCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTEST: gi|32794079|gb|CD946315.1|CD946315
genomic: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAGgtacaaccaa ... gtgtattcagATATGGAAGATCTGAAAGT-CTTTGCGAAAGATTCTGGTTCTCCTGAAGCT
EST: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAG ATATGGAAGATCEST: gi|67011759|gb|CO440508.1|CO440508
genomic: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAGgtacaaccaa ... gtgtattcagATATGGAAGATC
EST: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAG ATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTAEST: gi|67026706|gb|CO455455.1|CO455455
genomic: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAGgtacaaccaa ... gtgtattcagATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTA
EST: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAG ATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTAEST: gi|211206209|gb|FL245888.1|FL245888
genomic: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAGgtacaaccaa ... gtgtattcagATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTA
EST: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAG ATATGGAAGATCTAAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTA
genomic: AGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCATGCTGTCAAAGgtacaaccaa ... gtgtattcagATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTA
gctgaacttcttgcttttctccacacatataataacagctgatttgtgtattcagATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTAATGATTTGACTCACTGGGACCTTACCTTCTGGAGTGAACGACTGAGAGA
acatataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatttcttttcagcaatcattgtctcttttgtagggaaagtaggctgaacttcttgcttttctccacacatataataacagctgatttgtgtattcagATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCTAATGATTTGACTCACTGGGACCTTACCTTCTGGAGTGAACGACTGAGAGA
- - - - - ttcagca
- - - - - - - - - - - - - - - - - - - - - - ggctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acagctg