Sequence
atgc intronic sequence ATGC exonic sequencegcaagtcacataataattatctgtgtcattatgcagtcacatttcattattctctaccttctcataatctcatcaactaacttacatcatgttcggaactcctttccacagGTCATGACTCAGTGTCCTGAATGTGCCTCGGTAGACACCCCAATTCTTGATGCTCTTCACACAATGCATGATGGAAAATTTTTACATTTGCCTGTTCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G133621_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g69900.1 (Oryza sativa), 3'ss of exon 7
gcaagtcacataataattatctgtgtcattatgcagtcacatttcattattctctaccttctcataatctcatcaactaac-ttacatcatgttcggaactcctttccacagGTCATGACTCAGTGTCCTGAATGTGCCTCGGTAGACACCCCAATTCTTGATGCTCTTCACACAATGCATGATGGAAAATTTTTACATTTGCCTGTTCTGG
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------------------------gtaaggaagtcttaacatggaatgtctgctatgtttttcttaatctctttaactatcatggcatcatgcttgaaactcctttctacagGTCATGACCCAGACTCCTGAATGTGCCACGGTTGACACTCCAATCCTTGATGCCCTCCATACAATGCACGACGGAAAGTTTTTACATTTGCCTGTCTTAG
upper sequence: GRMZM2G133621_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA06G17720.1 (Glycine max), 3'ss of exon 6
------------------------gcaagtcacataataattatctgtgtcattatgca--gtcacatttcattattctctaccttctcataatctcatcaactaacttacatcatgttc--ggaactcctttcca---------cagGTCATGACTCAGTGTCCTGAATGTGCCTCGGTAGACACCCCAATTCTTGATGCTCTTCACACAATGCATGATGGAAAATTTTTACATTTGCCTGTTCTGG
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gtgctttgtttttatttttacattgttgagaagaaactgtttacttatgtttttatttaaggttgtatgtatctatcgtgttacctgaaaaattggcaatt-ctgagtttcttccttttcttgttgctcttatttgataaatatgcagGTCATGACTCCCAATTCAGTATGCGTAGTAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGAAAATTTTTGCATCTTCCTGCGGTTG
upper sequence: GRMZM2G133621_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA04G37370.3 (Glycine max), 3'ss of exon 8
---------------------------------------------------------------------------------gcaagtcacataataattatctgtgtcattatgcagtcacatttcattattctctacc--ttctcataatctcatcaactaacttacatcatgttcggaactcctttccacagGTCATGACTCAGTGTCCTGAATGTGCCTCGGTAGACACCCCAATTCTTGATGCTCTTCACACAATGCATGATGGAAAATTTTTACATTTGCCTGTTCTGG
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gtactttgtttttatttttacattgttgagacggaactgtttgcttttgttttccttttccattctttgattctgtaacatctatatctagtaatttttaaggttgtatattttctatcatgttacatgagaaattggcaattctgagggttcttccttttcttgttgctcttatttgataaa----tatgcagGTCATGACTCCAAATCCAGAATGTGTCATAATTGATACACCCATTGTTGATGCACTTCACACTATGCATGATGGGAAATTTTTGCATCTTCCTGTGGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccttctcataatctcatcaactaacttacatcatgttcggaactcctttccacagGTCATGACTCAGTGTCCTGAATGTGCCTCGGTAGACACCCCAATTCTTGATGCTCTTCACACAATGCATGATGGAAAATTTTTACATTTGCCTGTTCTGG
ctcctttccac CT-rich tract
tcataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaagtcacataataattatctgtgtcattatgcagtcacatttcattattctctaccttctcataatctcatcaactaacttacatcatgttcggaactcctttccacagGTCATGACTCAGTGTCCTGAATGTGCCTCGGTAGACACCCCAATTCTTGATGCTCTTCACACAATGCATGATGGAAAATTTTTACATTTGCCTGTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA