1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgaactcctgatctgttttcctctgaagaacgaaacgatccatactacttcgacgctgattgtctatgggctgtaaatacagGGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGGCAGATGATCTTTTTTTCTTCTCTTTTACATTGCTCAGCTCTTGTTCT
species | Zea mays |
transcript | GRMZM2G133331_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAG GGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAEST: gi|76931345|gb|DV172707.1|DV172707
genomic: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAGgtgaactcct ... gtaaatacagGGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGA
EST: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAG GGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGEST: gi|71429731|gb|DR810781.1|DR810781
genomic: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAGgtgaactcct ... gtaaatacagGGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATG
EST: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAG GGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAEST: gi|93017001|gb|EB642521.1|EB642521
genomic: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAGgtgaactcct ... gtaaatacagGGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGA
EST: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAG GGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAEST: gi|71311268|gb|DR791947.1|DR791947
genomic: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAGgtgaactcct ... gtaaatacagGGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGA
EST: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAG GGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCEST: gi|101391801|gb|EB817829.1|EB817829
genomic: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAGgtgaactcct ... gtaaatacagGGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGC
EST: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAG GGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGA
genomic: GGTCCAAGCTGTCCCATCTTGAGCAGGAGCTTCAAAGGGCAAGGCAGCAGgtgaactcct ... gtaaatacagGGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGA
gaacgaaacgatccatactacttcgacgctgattgtctatgggctgtaaatacagGGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGGCAGATGATCTTTTTTTCTTCTCTTTTACATTGCTCAGCTCTTGTTCT
cgctgat putative branch site (score: 6)
tgtaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaactcctgatctgttttcctctgaagaacgaaacgatccatactacttcgacgctgattgtctatgggctgtaaatacagGGGATGTTCATTGCAAGTGGACGCTCCGGAGATCATGGATGCTCCACTGGAGGCAGATGATCTTTTTTTCTTCTCTTTTACATTGCTCAGCTCTTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC