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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacaacgaaatagtgagtaatgtcaagtagttccattacagcatctaatgccaataatgtgaagttatgaatgtcactaataacgaaatttcacttgtagACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATCTTCTGGAACACAATCCTGAATTCTGCACTCACACAATCGATGTGTGGGA

Basic information

species Zea mays
transcript GRMZM2G133226_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133226_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g40030.1 (Oryza sativa), 3'ss of exon 7
-gacaacgaaa--tagtgagtaatgtcaagtagttccat-tacagcatctaatgccaataatgtgaagttatgaatgtcactaataacgaaatttcacttgtagACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATCTTCTGGAACACAATCCTGAATTCTGCACTCACACAATCGATGTGTGGGA
  ||||  |    |  | | |   ||  || |||  ||  | || | |||  |     | |    ||| ||| ||| |||   || | |  ||| |  |||||| | ||||||||||| || ||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
acacaatcatgcctgttcacttcagtggaggagtgacacatccaacttctgttattcttcaga--aagctatcaatatcat--atgatgttattccgattgtagGCGGTGCTGCTATTCTCATGCATGCTAGCTTTTCTGCTAAACTACACTATCTTCTGGAATACAATCCTGAATTCTGCACTCACACAATCGATGTGTGGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71440135|gb|DR821185.1|DR821185
EST:     ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATG                         ACTGTGCTGCTATTTTCGTGCATCCTAGCATTTTTACTGAACTACACTATC
genomic: ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATGgtaacattaa ... tcacttgtagACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATC
EST: gi|148933234|gb|EC876885.2|EC876885
EST:     ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATG                         ACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATC
genomic: ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATGgtaacattaa ... tcacttgtagACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATC
EST: gi|149103657|gb|EE289061.2|EE289061
EST:     ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATG                         ACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATC
genomic: ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATGgtaacattaa ... tcacttgtagACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATC
EST: gi|148947033|gb|EC892330.2|EC892330
EST:     ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATG                         ACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATC
genomic: ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATGgtaacattaa ... tcacttgtagACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATC
EST: gi|91054598|gb|EB165016.1|EB165016
EST:     ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATG                         ACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATC
genomic: ACCTAAAGAGGGCCATGGAATTTCCGTACCTTTATTCCCCTGGGTTCATGgtaacattaa ... tcacttgtagACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgccaataatgtgaagttatgaatgtcactaataacgaaatttcacttgtagACTGTGCTGCTATTTTCGTGCATCCTAGCATTTCTACTGAACTACACTATCTTCTGGAACACAATCCTGAATTCTGCACTCACACAATCGATGTGTGGGA
                                taataac  putative branch site (score: 1)
                                           tttcactt  putative PPT
                                taataacgaaattt  TA-rich tract