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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggaccaaaaccacctttcttctcgagttttccactgttgctgctttgctcattgttattggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGAGGCTACCGTGGCGGTGGGCGTTCCCGTGGTTCATATTACGGTGGCAGAG

Basic information

species Zea mays
transcript GRMZM2G132796_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132796_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g02090.1 (Oryza sativa), 3'ss of exon 7
gtactggaccaaaaccacctttcttctcgagttttccactgttgctgctttgctcattgttattggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGAGGCTACCGTGGCGGTGGGCGTTCCCGTGGTTCATATTACGGTGGCAGAG
     | || |   ||||||   |||| || | ||  ||  |  ||| |||||| |||||| ||  ||||||||| ||||| || || || |||||  | |||||||| |||||||| || || || ||||||||||| || ||  ||||||| ||||| |||||||||||||
-----gtacaaggtccacctgctttcttga-tgttgtaccatcactgttttgctgattgttgttt-tgtgcagACTTTTGGTGATTTCCCAAGGCATCGCCAGCCCTATCGTGGTGGGGGGCGTGGTTACCGTGGCGGCGGTCGCGCCCGTGGGTCATACTACGGTGGCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211472047|gb|FL082862.1|FL082862
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|21389979|gb|BQ528028.1|BQ528028
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGTGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|67022988|gb|CO451737.1|CO451737
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGTGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472052|gb|FL082867.1|FL082867
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472054|gb|FL082869.1|FL082869
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211041778|gb|FL481009.1|FL481009
EST:     GCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|148954039|gb|EC899436.2|EC899436
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211469523|gb|FL082856.1|FL082856
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|24773703|gb|CA408957.1|CA408957
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGTGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472043|gb|FL082858.1|FL082858
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|30032201|gb|CB834052.1|CB834052
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|21331886|gb|BQ487267.1|BQ487267
EST:     TGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGTGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: TGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472050|gb|FL082865.1|FL082865
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472048|gb|FL082863.1|FL082863
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472056|gb|FL082871.1|FL082871
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472045|gb|FL082860.1|FL082860
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGTGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|78114073|gb|DV532462.1|DV532462
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472055|gb|FL082870.1|FL082870
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472049|gb|FL082864.1|FL082864
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|7217014|gb|AW563136.1|AW563136
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGTGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|86474105|gb|DY240475.1|DY240475
EST:     CAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: CAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472053|gb|FL082868.1|FL082868
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472042|gb|FL082857.1|FL082857
EST:     GCCAAAYGGAAGGGGAAGACCTNCCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GCCAAATGGAAGGGGAAGACCT-TCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211469521|gb|FL082854.1|FL082854
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211469522|gb|FL082855.1|FL082855
EST:     GCCAAATGGAAGGGGAAGACCTTCCTGAACGGCGCASAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GCCAAATGGAAGGGGAAGACCTTC-TGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472046|gb|FL082861.1|FL082861
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|78089842|gb|DV518216.1|DV518216
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472044|gb|FL082859.1|FL082859
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211472051|gb|FL082866.1|FL082866
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|148948574|gb|EC894100.2|EC894100
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
EST: gi|211469520|gb|FL082853.1|FL082853
EST:     GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAG                         ACGTTTNGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA
genomic: GGCCAAATGGAAGGGGAAGACCTTCTGAACGGCGCAGAGTAGACACAGAGgtactggacc ... tggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcttctcgagttttccactgttgctgctttgctcattgttattggtgtgcagACGTTTGGCGAATTTCCGAGGCACAGGCAGCCCTACCGTGGTGGCGGCCGAGGCTACCGTGGCGGTGGGCGTTCCCGTGGTTCATATTACGGTGGCAGAG
                                     attgttatt  TA-rich tract