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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaattgaatatttttttcttcttgaagttaattcttaatcatcgacactatttgattcgaatgtactgttcttttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTG

Basic information

species Zea mays
transcript GRMZM2G132084_T04
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132084_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 3'ss of exon 6
gtaag-aaattgaatatttttttcttcttgaagttaattcttaatcatcgacactatttgattcgaatgtactgttctt-----ttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTG
||||| || ||||  || |||   |||||| |   | |  ||  |||||     |||||| ||  ||  | ||| |  |     || || |||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||
gtaagcaagttgagcatgtttcatttcttgtatgaagtcatt--tcatctcagttatttggttataacattctgatgctcggatttattttaagGTTTCTTGACACAGCTGGACTGAAAAAGTCAAGTGCTTACTTGGTTAATGGTATTCTGATGTTCGTTGCATGGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166452447|gb|EG305289.1|EG305289
EST:     AACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGC
genomic: -ACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaatt ... ttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGC
EST: gi|78076716|gb|DV505150.1|DV505150
EST:     TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: TACATGGTTCTCATTTCAGAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaatt ... ttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|211111684|gb|FL466622.1|FL466622
EST:     ATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
genomic: ATCAACTTGCGATGgtaagaaatt ... ttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGG
EST: gi|166625864|gb|EG208558.1|EG208558
EST:     GAGACAACCACCCCTGAAATCAACTTGCGATG                         GTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTTACTTGGTTAATG
genomic: GAGACAACCACCCCTGAAATCAACTTGCGATGgtaagaaatt ... ttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTT-ACTTGGTTAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcttaatcatcgacactatttgattcgaatgtactgttcttttcttctaagGTTTCTTGACACTGCTGGACTGAAGAAATCAAGTGCTTACTTGGTTAATGGAATTCTGATGTTTGTTGCATGGCTG
                                   tactgttcttttcttc  CT-rich tract
                    tatttgatt  TA-rich tract