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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttagtagaattatttagtttcaaaccgagccatcttaattttttttatcattagctggccttccaatgctgaattttatcccatttctttgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACCCGACTTACATGATCCGCGCCGTCAGTTCAAACGCTTCCGACAACGTCT

Basic information

species Zea mays
transcript GRMZM2G132069_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132069_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 3'ss of exon 9
----tttagtagaattatttagtttcaaaccgagccatcttaattttttttatcattagctggccttccaatgctgaattttatcccatttctttgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACCCGACTTACATGATCCGCGCCGTCAGTTCAAACGCTTCCGACAACGTCT
    |||   |  ||  |  ||  |  ||  || |||    |   |  | |  | | | ||    |   |||||||||||   |||| ||||||   |||||||||||||||||||||||||| |   ||||| || ||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||
catatttgtcaatatcgtaaagcctggaa--gaaccaaagaaccatgatgtgccctgatctcat-tcagaatgctgaattacttccc-tttcttcatcatgcagGATCATTTCAAGAAGAAGCGCAACTTCCCCATCACTCTCAAGTACATCGACCCGACATACATGATCCGTGCCGTCAGGTCAAACGCATCCGACAACGTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76016888|gb|DT944058.1|DT944058
EST:     GAGTGCAGAGAACGGCATCGGTGTCGTGAAGCTGATGGGTCGCAACAGCG                         GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
genomic: GAGTGCAGAGAACGGCATCGGTGTCGTGAAGCTGATGGGTCGCAACAGCGgtacgtttat ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcattagctggccttccaatgctgaattttatcccatttctttgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACCCGACTTACATGATCCGCGCCGTCAGTTCAAACGCTTCCGACAACGTCT
                                          ctttgac  putative branch site (score: 4)
                             ttttatcccatttctt  CT-rich tract
                         tgaattttat  TA-rich tract