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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtacatagtcttttaagtgtattgacatgttttttttctctgcaatcttctcctaacattgtttcatctgttaagGTTCGCCTGTGGGACTATGTAAATGGATGTCTCCTTGATACATTTCAAGCCAAAGATAAG

Basic information

species Zea mays
transcript GRMZM2G131998_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13149651|gb|BG319973.1|BG319973
EST:     GCATATCTGAAAACCAGAGTTTTCTTATATCAGGYGGAGGTGATTCAACT                         GTTCGCCTGTGGGACTATGTAAATGGATGTCTCCTTGATACATTTCAAGCC
genomic: GCATATCTGAAAACCAGAGTTTTCTTATATCAGGAGGAGGTGATTCAACTgtgggtacat ... atctgttaagGTTCGCCTGTGGGACTATGTAAATGGATGTCTCCTTGATACATTTCAAGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgacatgttttttttctctgcaatcttctcctaacattgtttcatctgttaagGTTCGCCTGTGGGACTATGTAAATGGATGTCTCCTTGATACATTTCAAGCCAAAGATAAG
                              tcctaac  putative branch site (score: 1)
                                         tttcatct  putative PPT
      atgtttttttt  TA-rich tract