1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgttttatttctttcctctcttgcatatgttttatttctttcctcccttgcatagttctaaaggtttgaatttccttgtctgtattaatgttccaatggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATGGCACCTCGGTTTGGCAAGTTGAACAAGTGTTTAGCTGAACTG
species | Zea mays |
transcript | GRMZM2G131324_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACATGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|76293904|gb|DV033472.1|DV033472
genomic: AGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|76281817|gb|DV021385.1|DV021385
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAAC-AAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|67031739|gb|CO460488.1|CO460488
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTTCTT-CACAGCTGAATCGGCAGAEST: gi|32807837|gb|CD960071.1|CD960071
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTT-CTTTCACAGCTGAATCGGCAGA
EST: GATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|32792814|gb|CD945050.1|CD945050
genomic: GATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: GATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|76016034|gb|DT943204.1|DT943204
genomic: GATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|71758032|gb|DR955969.1|DR955969
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|76010883|gb|DT938053.1|DT938053
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|148995051|gb|EE034364.2|EE034364
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTTTTTCACAGCTGAATCGGCAGATEST: gi|24764738|gb|CA399901.1|CA399901
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCACCAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|78113480|gb|DV531871.1|DV531871
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|71758174|gb|DR956111.1|DR956111
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTCTCACAGCTGAATCGGCAGATEST: gi|111197436|gb|EE295571.1|EE295571
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCGGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|211012560|gb|FL439511.1|FL439511
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|87156287|gb|DY401076.1|DY401076
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACATGTTCTTCTTTCACAGCTGAATCGGCAGATEST: gi|60343210|gb|DN210183.1|DN210183
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
EST: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGA GTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
genomic: AACATCCTTTCAAAGATGGATCTGGTCTCCAACAAAAAAGATGTAGAAGAgtatgtttta ... atggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGAT
catagttctaaaggtttgaatttccttgtctgtattaatgttccaatggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATGGCACCTCGGTTTGGCAAGTTGAACAAGTGTTTAGCTGAACTG
tattaat putative branch site (score: 2)
tattaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttatttctttcctctcttgcatatgttttatttctttcctcccttgcatagttctaaaggtttgaatttccttgtctgtattaatgttccaatggctctagGTACCTGGACCCGAATGCACAGGTTCTTCTTTCACAGCTGAATCGGCAGATGGCACCTCGGTTTGGCAAGTTGAACAAGTGTTTAGCTGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA