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...tattgtaacaattgactacagtttgaaatgagtcaaactgaacctaagataactgaaagtacagtatcaatgacatggcatgctaattactacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG
species | Zea mays |
transcript | GRMZM2G130230_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCGATTATTCTTGCCTCTTTGGGACCGCGACAATATTGAATA-TATACAG ATTGTATTCAGGGAAGACTTTGGTACEST: gi|67037531|gb|CO464345.1|CO464345
genomic: CCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGA-TAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTAC
EST: ACCGATTGTTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACEST: gi|71447340|gb|DR828390.1|DR828390
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
EST: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACEST: gi|89759526|gb|DY688327.1|DY688327
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
EST: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG ATTGTATTCAGGGAAGACTTTGGTACTGAAEST: gi|6194863|gb|AW146967.1|AW146967
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAA
EST: ACAATATTGATAATATACAG ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACEST: gi|78083439|gb|DV511832.1|DV511832
genomic: ACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
EST: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAEST: gi|78109778|gb|DV528194.1|DV528194
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGA
EST: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAG ATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
genomic: ACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatctt ... tacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGAC
aagataactgaaagtacagtatcaatgacatggcatgctaattactacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG
tgctaat putative branch site (score: 2)
taattacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtaacaattgactacagtttgaaatgagtcaaactgaacctaagataactgaaagtacagtatcaatgacatggcatgctaattactacactgcagATTGTATTCAGGGAAGACTTTGGTACTGAAGGGCGTGGAGGATATTTTGACCAATATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - -tgaaatg
- - - - - - - - - - - - - - - - - -aactgaa
- - - - - - - - - - - - - - - - - - -ctgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcatgc