1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatatatgtatatatgcaaggtgatcatgccttctatgtgaaatactgcatcaaatgtatatcatctcagtttatctgcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
species | Zea mays |
transcript | GRMZM2G129268_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGTGATGTTTACATCACTAACAATTATAGCCAGTGTGATAATGTTCAAG GATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCEST: gi|211394432|gb|FL356656.1|FL356656
genomic: ATGTGATGTTTACTTCACTAACAATTATAGCCAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
EST: ATGTGATGTTTACATCACTAACAATTATAGCCAGTGTGATAATGTTCAAG GATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCEST: gi|166546894|gb|EG099592.1|EG099592
genomic: ATGTGATGTTTACTTCACTAACAATTATAGCCAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
EST: ATGTGATGTTTACATCACTAACAATTATAGCCAGTGTGATAATGTTCAAG GATTGGGACCATCAAAATCCAACACAAATTGTTACAGEST: gi|32833802|gb|CD973480.1|CD973480
genomic: ATGTGATGTTTACTTCACTAACAATTATAGCCAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAG
EST: AGCCAGTGTGATAATGTTCAAG GATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCEST: gi|60355925|gb|DN222898.1|DN222898
genomic: AGCCAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
EST: ATGTGATGTTTACATCACTAACAATTATAGCCAGTGTGATAATGTTCAAG GATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCEST: gi|60355918|gb|DN222891.1|DN222891
genomic: ATGTGATGTTTACTTCACTAACAATTATAGCCAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
EST: ATGTGATGTTTACATCACTAACAATTATAGCCAGTGTGATAATGTTCAAG GATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCEST: gi|5846795|gb|AI999878.1|AI999878
genomic: ATGTGATGTTTACTTCACTAACAATTATAGCCAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
EST: ATGTGATGTTTACATCACTAACAATTATAGCCAGTGTGATAATGTTCAAG GATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
genomic: ATGTGATGTTTACTTCACTAACAATTATAGCCAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
ctgcatcaaatgtatatcatctcagtttatctgcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
tcttgat putative branch site (score: 108)
ctttgtttctt CT-rich tract
aaatgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatatgtatatatgcaaggtgatcatgccttctatgtgaaatactgcatcaaatgtatatcatctcagtttatctgcgctttgtttcttgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTCATGACTATCCTATCTGGGACGTTTCTTCTTCACAAGACAAAAGATATGA
- -atatgta
- - - - - - -atgcaag
- - - - - - - - - - - - - -tgccttc
- - - - - - - - - - - - - - - - - - - - - - -ctgcatc