Sequence
atgc intronic sequence ATGC exonic sequencegtctgttttgcatttatttccatttggataataaagagataaactgtataacctgacacttcttgtttgatgcgtgttaaagccagtctggttcatcagtgttcttattgtttttgtttcctttattccttctgatggtccatctatatgtttcatggttgcagGCTGGCCAAGGTGCTAAGCTTTTGAACATACTAGCTAAATACTGTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G129155_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 3'ss of exon 7
----------------------------gtct--gttttgcatttatttccatttggataataaagagataaactgtataacctgacacttcttgtttgatgcgtgttaaagccagtctggttcatcagtgttctta-ttgtttttgtttcctttattccttctgatggtccatctatatgtttcatggttgcagGCTGGCCAAGGTGCTAAGCTTTTGAACATACTAGCTAAATACTGTGAAG
||| || || | || ||||| | | | | ||| ||| ||||||| || || ||| || | | || ||| | |||||| ||||||| | | |||| | |||| | | ||||||||||||| | ||||| | |||||||||| ||||||||||||||||||||||| || || || ||||||||||
gtggggtttgaattaaaaaagaaattttgtccaagtgttagaagcataaa-atttgtttgaaatgtttttcaacaatattacctgactttttttatttagggcttaatgaaatcaggccaattcatctgtgttctcagctaattttttgtcctct----ttgttgatggtccatctgt--gtttctttactgcagGCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32832868|gb|CD972546.1|CD972546EST: CTGCTGTTGCTAAGGAGCTTGCTGTGTATGGTGATCCTGTTGATTCAAAG GCTGGCCAAGGTGCTAAGCTTTTGAACATACTAGCTAAATACTGTGAAG
genomic: CTGCTGTTGCTAAGGAGCTTGCTGTGTATGGTGATCCTGTTGATTCAAAGgtctgttttg ... atggttgcagGCTGGCCAAGGTGCTAAGCTTTTGAACATACTAGCTAAATACTGTGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttttgtttcctttattccttctgatggtccatctatatgtttcatggttgcagGCTGGCCAAGGTGCTAAGCTTTTGAACATACTAGCTAAATACTGTGAAG
ttctgat putative branch site (score: 3)
tatatgttt TA-rich tract