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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggtttgctagtaaaatgcccaaatcctgtcttgatgtctttcttggttcagttatttttatgttgacctctaatttgagttgctacaatctaattttagGCAGAGAACGTCATCACACAGCTTCAGAAGATATATCCCAGTGATGGTTTGCTTCCTATTTACATAAATCCTCATTCTGGGACAGCATCGTACTCCACTA

Basic information

species Zea mays
transcript GRMZM2G128914_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128914_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 3'ss of exon 7
-aggtttgctagtaaaatg--cccaaatcctgtcttgatgtctttcttggttcagttatttttatgttgacctc-taatttgagttgctacaatctaattttagGCAGAGAACGTCATCACACAGCTTCAGAAGATATATCCCAGTGATGGTTTGCTTCCTATTTACATAAATCCTCATTCTGGGACAGCATCGTACTCCACTA
   || |   | | | ||      |||||||| ||  |  ||| | || |    | | | || || |||| |||  | ||||   || ||||||  |||||||||||||||| ||||||| |||||||||||||||||| || || ||||| || || ||||| |||||||| |||||||| || || || |||||||| || |
cccgtatataatttatataaatttaaatcctgcctgaaaatctctttttg----gctttcttaatattgaactcacagtttggcctgatacaatacaattttagGCAGAGAATGTCATCAGACAGCTTCAGAAGATATACCCAAGCGATGGCTTACTCCCTATATACATAAACCCTCATTCAGGAACTGCGTCGTACTCAACAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttcagttatttttatgttgacctctaatttgagttgctacaatctaattttagGCAGAGAACGTCATCACACAGCTTCAGAAGATATATCCCAGTGATGGTTTGCTTCCTATTTACATAAATCCTCATTCTGGGACAGCATCGTACTCCACTA
                                           atctaat  putative branch site (score: 3)
     agttatttttatgtt  TA-rich tract