Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaacatagtacattagtactatttgctagagtagaactgtatgactatatggcacacaagtgtcttacagttcttcatctttgcttatgtaaattccagTGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG

Basic information

species Zea mays
transcript GRMZM2G128748_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013115_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g50750.2 (Oryza sativa), 3'ss of exon 7
aaaacatagtacattagtactatttgctagagtagaactgt---atgactatatggcacacaagtgtcttaca-gttcttcatctttgcttatgtaa--------attccagTGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG
     ||    | || | ||   ||  || |||||||| |    || |  |||||    | || | |||||   ||  |||  | ||  || |  ||         || |||  ||||||||  |||||||||||||||| |||||||||||||| |||||||| ||||||
----tattcctctttggcacc--ttaatatagtagaacaggagaataataatatgctgaagaaatttcttatgtgtgtttccccctttattttccaactgatgcagTTTCAGCTAGGCGAACCAGTAGCTGGTGTTTCGATGAGAAAGTTCTGATACAGTCACTTTACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74242220|gb|DT650134.1|DT650134
EST:     GGTATCATCCGACATGAGCGACCTTGCCTCACAAGGTTCGGGAAATCCAG                         TGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCAC
genomic: GGTATCATCCGACATGAGCGACCTTGCCTCACAAGGTTCGGGAAATCCAGgtgaaccttt ... taaattccagTGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCAC
EST: gi|74239320|gb|DT647234.1|DT647234
EST:     GGTATCATCCGACATGAGCGACCTTGCCTCACAAGGTTCGGGAAATCCAG                         TGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTG
genomic: GGTATCATCCGACATGAGCGACCTTGCCTCACAAGGTTCGGGAAATCCAGgtgaaccttt ... taaattccagTGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatatggcacacaagtgtcttacagttcttcatctttgcttatgtaaattccagTGAGGCGAACTGGTAGCTGGTGTTTCGACGAGAAAGTTCTGATTCAGTCACTCTACAAG
                 gtcttac  putative branch site (score: 3)
                                        ttatgtaaatt  TA-rich tract