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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcactgtatgctttgattggctacttaaccttgtcagttgtcttaaatttaccactacttttggtcttaaaaacatgtgttttagaacaagatttgaacaaatcataatattgcaggcatcaataatacttaattaattatttagtctgcaaacatgtaaagtggttgctatttttagATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT

Basic information

species Zea mays
transcript GRMZM2G128688_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128688_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 3'ss of exon 7
gtatcactgtatgctttgattggctacttaaccttgtcagttgtcttaaatttaccactacttttggtcttaaaaacatgtgttttagaacaagatttgaacaaatcataatattgcaggcatcaataatacttaattaattatttagtctgcaaacatgtaaagtggttgctatttttagATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT
                                                                                              |  |    || || |  |  || | |  |   || |      | |  ||||   | | | || |       ||||||     | ||||| |||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||  || ||||||| ||||||||||||
--------------------------------------------------------------------------------------------gtaggttgctaattcgtgctgctgaacgtgtttctattg-----tcagatattccttgtactaata------atggttgtacaatatagATTTTGACTGCCCTTCCTACAATTGAGTTGGACCCTCCCACAATATCTATGACTTTTGGTGTGAATGATTCACCACTGTCTGGCCGCGATGGCACTCAT

upper sequence: GRMZM2G128688_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT2G31060.3 (Arabidopsis thaliana), 3'ss of exon 7
gtatcactgtatgctttgattggctacttaaccttgtcagttgtctt-aaatttaccactacttttggtcttaaaaacatgtgttttagaacaagatttgaa--caaatcataatattgcaggcatcaataatacttaattaattatttagtc---tgcaaacatgtaaagtggttgctattttt-agATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT
                                       ||  | |   |||  || ||| |  |  || |||          | |||||   | | |||||  |   |  ||| ||  |      || | || | || || | |||| || |   || | | |||     |  ||  | | ||| || |    | ||| || |||||  ||||||| ||||| || ||||| |||||||||||||| || ||||| || ||||||||||| | ||||||||| || 
---------------------------------------gtaatatccgaatggactacttccct--gttttat---------tcttagatatataattgaattctgcttttaacataacttcttccattgatccctatttgaatattaagacgcttgaataaatgcttcatttttattgtctttcagGTCACAACTGCACTCCCTACTGTTGAGTTAGATCCACCAACAATTTCTATGACGTTTGGTGTCAATGACTCTCCGTTGGCTGGTCAGGATGGCACCCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatacttaattaattatttagtctgcaaacatgtaaagtggttgctatttttagATATTGAGTGCTCTGCCTACAATTGAGTTGGATCCTCCCACAATATCTATGACGTTTGGCGTGAATGATTCACCGTTGGCTGGCCGGGATGGCACTCAT
        aattaat  putative branch site (score: 3)
                                             ctattttt  putative PPT
      ttaattaattatttag  TA-rich tract