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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtattacgactagttctagacactatgtaatttgtaccattgttgcttctagcgaaccatgtttatgttctgtcgtggataactatgctccatatttaatggtgatgtttgtttccctcttatttgcagGTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATT

Basic information

species Zea mays
transcript GRMZM2G126858_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 3'ss of exon 6
gtacgtattacgactagttctagacactatgtaatttgtaccattgttgcttctagcgaaccatgtttatgttctgtcgtggataactatgctccatatttaatggtgatgtttgtttccctcttatttgcagGTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATT
           |     ||||||     |  |  ||| |    || ||| | ||| | ||||||  | ||      || ||||  |||  |||| || |||  || |  |      ||  |||| | ||||||||||||||| ||||||||||||||||||||  |||||||||||||||| || |||||| || || |||||||
-----------gtacgtttctagttgggacttcgtttttcttttttttggt-ctacctaaccattctgat------tcttggactactcagctcaatgtttgctgctact-----cttatctctcaattgcagGTACATTGACAGTGCTGGCTTAAGTGGTCCACTACCATCATCATTTTCCAAGCTTACAAGAATGCAAACATT

upper sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 3'ss of exon 6
gtacgtattacgactagttctagacactatgtaatttgtaccattgttgcttctagcgaaccatgtttatgttctgtcgtggataactatgctccatatttaatggtgatgtttgtttccctcttatttgcagGTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATT
                || |    |  ||||  |||    |  || |||||| | ||  ||||   |      |  |  ||  |   |   ||  | | | ||||       |||  |  |||||| ||| ||||||||||| ||||||||||||||||||||  ||||||||||||| || || |||||| || || ||| |||
----------------gtgcgtttctatatgggatt----ctgtt-ttgctttttgcttaccaaagtaccaaaccattctgttttcttggact--aaactaaatg-------ttgggtttctcttaattgtagGTACATTGACAGTGCTGGCTTAAGTGGTCCGTTACCATCATCATTGTCCAAGCTTACAAGAATGCAAATATT

upper sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 3'ss of exon 5
gtacgtattacgactagttctagacactatgtaatttgtaccattgttgcttctagcgaaccatgtttatgttctgtcgtggataactatgctccatatttaatggtgatgtttgtttccctcttatttgcagGTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATT
                    |||    |||  ||    |  |||  || ||| || | || |||  |||| ||||    |||    ||  |||| || |||     || | ||||| ||||||  | ||| ||||||||||| ||||||||||||||||||    |||||||||||||||| || ||||||  | || ||| |||
-------------------gtaggt-ttattcaagactt--catcttttcttttaccaaaacat--ttattttct----tgggcttctcagctcaatttttc----tgctatttgtatccctc--aattgtagGTACATTGACAGTGCTGGCTTAAGTGGTGAGCTACCATCATCATTTTCCAAGCTTACAAAAGTGGAAAAATT

upper sequence: GRMZM2G126858_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g52640.3 (Oryza sativa), 3'ss of exon 6
gtacgtattacgactagttctagacactatgtaatttgtaccattgttgcttctagcgaaccatgtttatgttctgtcgtggataactatgctccatatttaatggtgatgtttgtttccctcttatttgcagGTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATT
                ||      ||  |  ||||||||  | |||||  || |      | | |   |  || | |  ||    ||||| |  | || |   |  || | ||||| || |||  | |||||||| |||||| |||||||||||||||||     ||||||||||||| || || |||||| || |||||| |||
----------------gtgtgtttcaacaaataatttgtcactttgttctttttt-----ctacgaagacattttattttgttggactattcagcctaatgtgttctgctatttgtatctctc--aattgcagGTTCATTGACAGTGCTGGCTTAAGTGGAGAGCTACCATCATCATTATCCAAGCTTACAAGAATGAAAATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggataactatgctccatatttaatggtgatgtttgtttccctcttatttgcagGTACATTGATAGTGCTGGCTTAAGTGGTCCTATACCATCATCATTTTCGAAACTTACACGATTGAAAACATT
                                 tttgtttccctcttat  CT-rich tract
                 atatttaat  TA-rich tract