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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattccattatatttacatttttgtttttcttattgtctaagttgcccagttgcttttacgctacctttgttcatcacttcattataacattttcagGTGATGACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTG

Basic information

species Zea mays
transcript GRMZM2G126656_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126656_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 3'ss of exon 7
-gtattccattatatttacatttttgtttttctt-----attgtctaag--ttgcccagttgcttttacgctacctttgttcatcacttcattataacattttcagGTGATGACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTG
  |  ||||  | |||||||||||  |   ||||         ||| ||  |||   | |||| | |   ||  || ||||  |   ||||  || |  |||  ||||||||||||| |||||||||| ||| |||||||| || |||||||||||| |  ||||||||||||||||||| || |||||||||||||||||| |||
gtttctccaccagatttacattttcttgcctcttccgatgccatctgagctttgtttaattgcatatgaactcactgtgttact---ttca--attatttttgaagGTGATGACTGTAAACCCAGATTTTGCTACATTAGACACGACAATTCTTGATGCTCTACATATAATGCATGATGGAAAGTTCTTGCATATTCCTGTTCTTG

upper sequence: GRMZM2G126656_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA08G00560.3 (Glycine max), 3'ss of exon 7
--------------------------------------------------gtattccattatatttacatttttgtttttcttattgtctaagttgcccagttgctt----ttacgctacctttgttcatcacttcattataacattttcagGTGATGACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTG
                                                  |     | || |        |||  ||| | |  || |     ||  | |  |  |      |  | |   ||| ||| | | |      |  |   |  |||| ||||||   ||||||||||||||  || |||| ||||| || || ||| || | ||||| ||||||||||| |||||||| ||| |||||||  | |
gttgttatttcattttaatatttattttttggaagtgacttgagtggaaagagggtcgttgtgagaggcctttcttttgtttggttctgattttttgctaaatattcagaactgagttgattttcttcttgattcttccctttctaatgtagGTAATGACTCCAAACCCAGATTGTGCATCAATAGATACAACGATACTGGATGCACTGCATATGATGCATGATGGGAAATTCTTACATCTTCCTGTGGTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcccagttgcttttacgctacctttgttcatcacttcattataacattttcagGTGATGACTGTTAACCCAGATTGTGCCACATTAGAAACAACAATTCTTGATACATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTATTG
                                        ttataac  putative branch site (score: 2)
                                              cattttc  CT-rich tract
                                    ttcattataacatttt  TA-rich tract