1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...accgaaagcctaataaaaagaacagcaccaaattaacttcgtgcaattctaatcattattgcttgagttctaacagcatgctgatatttcttacagtcagGCGTATCTGAGGTCATATATTTCGTTGAAAAAAAGATTGACAACTCAGCTCACGTTTATGTTGCCTCTCACAAGCTATTGTCGATGGCTGGTGTCAAG
species | Zea mays |
transcript | GRMZM2G124091_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG GCGTATCTGAGGTCATATATTTCGTTGAAAAAA-GAATGACAACTCAGCTCEST: gi|89253024|gb|DY624810.1|DY624810
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcagGCGTATCTGAGGTCATATATTTCGTTGAAAAAAAGATTGACAACTCAGCTC
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|89253024|gb|DY624810.1|DY624810
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|89253024|gb|DY624810.1|DY624810
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|89253024|gb|DY624810.1|DY624810
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|101399938|gb|EB821816.1|EB821816
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|101399938|gb|EB821816.1|EB821816
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|101399938|gb|EB821816.1|EB821816
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|101399938|gb|EB821816.1|EB821816
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|149000975|gb|EE038215.2|EE038215
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|149000975|gb|EE038215.2|EE038215
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|149000975|gb|EE038215.2|EE038215
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|149000975|gb|EE038215.2|EE038215
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG TEST: gi|76916412|gb|DV166374.1|DV166374
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcag-
EST: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAG GCGTATCTGAGGTCATATATTTCGTTGNNNNNNNGATTGACAACTCAGCTC
genomic: TGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctct ... ttacagtcagGCGTATCTGAGGTCATATATTTCGTTGAAAAAAAGATTGACAACTCAGCTC
attctaatcattattgcttgagttctaacagcatgctgatatttcttacagtcagGCGTATCTGAGGTCATATATTTCGTTGAAAAAAAGATTGACAACTCAGCTCACGTTTATGTTGCCTCTCACAAGCTATTGTCGATGGCTGGTGTCAAG
tatttctt CT-rich tract
aatcattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accgaaagcctaataaaaagaacagcaccaaattaacttcgtgcaattctaatcattattgcttgagttctaacagcatgctgatatttcttacagtcagGCGTATCTGAGGTCATATATTTCGTTGAAAAAAAGATTGACAACTCAGCTCACGTTTATGTTGCCTCTCACAAGCTATTGTCGATGGCTGGTGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - ataaaaa
- - - - - - - - - - - cagcacc
- - - - - - - - - - - - - - - - - - - -cgtgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcatgc