Sequence
atgc intronic sequence ATGC exonic sequence...gataactacttcattcactttttattttctcatcatcaccagcatcttcaaaaagtctaaccatcatgttctttttcacctttttctttgtaactaccagTGATCCGCACACCAGAGGCGAGAACAAATATGATGAAGCTGTCACAGCGGATGATCACTAGTTTCTCTGCCAACATCAGTGCTTCTGGGAGCCAATCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G123140_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g42490.1 (Oryza sativa), 3'ss of exon 9
----------------------------------------------gataactacttca----ttcactttttattttctcatcatcaccagcatcttcaaaaagtctaaccatcatgttctttttcacctttttctttgtaactaccagTGATCCGCACACCAGAGGCGAGAACAAATATGATGAAGCTGTCACAGCGGATGATCACTAGTTTCTCTGCCAACATCAGTGCTTCTGGGAGCCAATCTTG
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gtgcgcattaccactagctatttgtaaattgtgagaattcagaatccacagtttgtgtagagttgtggattctgaattctcacaattcacaaaatccatcctgaccatttatgatataatcttctcgatccctttgtttctgattcacagTGATCCGCACCCCTGAGGCAAGAACAAATATGATGAAGCTGTCGCAGCGGATGATCACCACTTTCTGTGCTAACATCAGTGCTTCTGGAACCCAATCTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149102264|gb|EE287647.2|EE287647EST: ATGCGAGCGCCTTGCCAGTGAGCTCGCCCGCAACATCGCCGACCTGGGAG TGATCCGCACACCAGAGGCGAGAACAAATATGATGAAGCTGTCACAGCGGA
genomic: ATGCGAGCGCCTTGCCAGTGAGCTCGCCCGCAACATCGCCGACCTGGGAGgtatgctcta ... taactaccagTGATCCGCACACCAGAGGCGAGAACAAATATGATGAAGCTGTCACAGCGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcaaaaagtctaaccatcatgttctttttcacctttttctttgtaactaccagTGATCCGCACACCAGAGGCGAGAACAAATATGATGAAGCTGTCACAGCGGATGATCACTAGTTTCTCTGCCAACATCAGTGCTTCTGGGAGCCAATCTTG
ttgtaac putative branch site (score: 2)
tcatgttctttttcac CT-rich tract
tttttcttt TA-rich tract