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gtgatatcagtgatgcagacttatgtttcaattatatggtgttgatactgttggcattccatgtaagctgatcgtattaataccttttttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATGAATTTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTA
species | Zea mays |
transcript | GRMZM2G122135_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTCAGCTTTAGCCTCAKTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATEST: gi|31356310|gb|CD440667.1|CD440667
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
EST: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATEST: gi|211334572|gb|FL404959.1|FL404959
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
EST: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATEST: gi|67034361|gb|CO462911.1|CO462911
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
EST: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTNAC-ATGGAACAGCTTCTTTCA-TTTTTCTCTCTTTGCTGAAGGAEST: gi|32914759|gb|CF019571.1|CF019571
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCT-ACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGA
EST: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATEST: gi|24763712|gb|CA398883.1|CA398883
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
EST: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATEST: gi|211221964|gb|FL414368.1|FL414368
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
EST: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATEST: gi|40336631|gb|CK370701.1|CK370701
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
EST: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATEST: gi|32919959|gb|CF024771.1|CF024771
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
EST: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATEST: gi|32849378|gb|CD989059.1|CD989059
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
EST: TACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATEST: gi|31361222|gb|CD445579.1|CD445579
genomic: TACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
EST: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAG GATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
genomic: GTTCAGCTTTAGCCTCAGTCATTATGGGAATGGCTCCTGTACTGGGAAAGgtgatatcag ... tttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGAT
tgatactgttggcattccatgtaagctgatcgtattaataccttttttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATGAATTTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTA
tattaat putative branch site (score: 2)
tacctttttttt CT-rich tract
tattaatacctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatatcagtgatgcagacttatgtttcaattatatggtgttgatactgttggcattccatgtaagctgatcgtattaataccttttttttggcagGATGCTACCATGGAACAGCTTCTTCCAATTTTTCTCTCTTTGCTGAAGGATGAATTTCCAGATGTTCGGCTTAACATAATCAGCAAGCTTGATCAGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT