1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagtttctcttctttgcttatcccacagatttcctgtggttatgtatccatctgggcaacaaactcagaactaaacacattttttgttaaatgtgattttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
species | Zea mays |
transcript | GRMZM2G121790_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAG CCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAGEST: gi|148932530|gb|EC876330.2|EC876330
genomic: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAGgttagtttct ... attttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
EST: TGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTTGGC-AG CCTCTCTTCCCTGEST: gi|211251114|gb|FL353291.1|FL353291
genomic: TGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTT-GGCCAGgttagtttct ... attttatcagCCTCTCTTCCCTG
EST: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAG CCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAGEST: gi|71441697|gb|DR822747.1|DR822747
genomic: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAGgttagtttct ... attttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
EST: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAG CCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAGEST: gi|32855414|gb|CD995095.1|CD995095
genomic: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAGgttagtttct ... attttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
EST: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAG CCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAGEST: gi|211298028|gb|FL233897.1|FL233897
genomic: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAGgttagtttct ... attttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
EST: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAG CCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAGEST: gi|211326797|gb|FL341548.1|FL341548
genomic: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAGgttagtttct ... attttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
EST: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAG CCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAGEST: gi|211298026|gb|FL233895.1|FL233895
genomic: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAGgttagtttct ... attttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
EST: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAG CCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAGEST: gi|20300401|gb|BQ163344.1|BQ163344
genomic: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAGgttagtttct ... attttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
EST: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAG CCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
genomic: TTGATATTTGGTCAGCTGGATGTGTTCTTGCTGAGCTGCTTCTTGGCCAGgttagtttct ... attttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
tctgggcaacaaactcagaactaaacacattttttgttaaatgtgattttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
aactaaa putative branch site (score: 160)
ttttatc putative PPT
attttttgttaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttctcttctttgcttatcccacagatttcctgtggttatgtatccatctgggcaacaaactcagaactaaacacattttttgttaaatgtgattttatcagCCTCTCTTCCCTGGTGAAAGTGCTGTGGATCAGCTTGTTGAGATAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT