Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagccaggaaatagcttgattaatttattagaatttgcaataaaataatatgtaatttattctccttttgatcacaataagctaattcatcttagcgtttactgtgtatatgattctgggggtagatatatgaagttatgaacatgcggtttctgtttcagATGGATCGCTTTGGACATTTCAAACTGTGGCATGCAGGAGGATCTATTTTAGTGGCAATTTCCTTCTCGTCTGTTTTTGGTAGCTGTGTTCCTTGCAAAC

Basic information

species Zea mays
transcript GRMZM2G121458_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121458_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g39010.2 (Oryza sativa), 3'ss of exon 3
gtatgagccaggaaatagcttgattaatttattagaatttgcaataaaataatatgtaatttattctccttttgatcacaataagctaattcatcttagcgtttactgtgtatatgattctgggggtagatatatgaagttatgaacatgcggtttctgtttcagATGGATCGCTTTGGACATTTCAAACTGTGGCATGCAGGAGGATCTATTTTAGTGGCAATTTCCTTCTCGTCTGTTTTTGGTAGCTGTGTTCCTTGCAAAC-------------------------------------
                                                                                                  | ||||| ||||||||   |||      ||||||| | || || |          ||| |  | ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| | ||||||||||                                     
--------------------------------------------------------------------------------------------------gtgtttattgtgtata--gttccaaac-tagatatgtaaa-ttctatcttcttttttttttatccagattgatcgctttggacattttaaactgtggcatgcagGAGGATCCATTTTAGTAGCAATTTCCTTCTCATCTGTTTTTGGTAGCTGTTTGCCTTGCAAACTTACGGGAACTATTTCATCTACAATGGAGACTGTTGG

upper sequence: GRMZM2G121458_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g39010.1 (Oryza sativa), 3'ss of exon 3
gtatgagccaggaaatagcttgattaatttattagaat-ttgcaataaa--------ataatat----gtaatttattctccttttgatcacaataagctaattcatcttagcgtttactgtgtatatgattctgggggtagatatatgaagttatgaacatgcggtttctgtttcagATGGATCGCTTTGGACATTTCAAACTGTGGCATGCAGGAGGATCTATTTTAGTGGCAATTTCCTTCTCGTCTGTTTTTGGTAGCTGTGTTCCTTGCAAAC
||| || | | |||| | | |||||  |||| || |   |||  |||||        || ||||     |   ||||  ||  || ||        | ||| ||   ||  | ||||| ||||||||   |||      ||||||| | || || |          ||| |  | ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| | ||||||||||
gtacgacctaagaaagaacatgattg-tttactaaagcattgttataaagctgtgacatcatattctcatggcttatcttctcttagacgttcgcta-ctagttttcct--gtgtttattgtgtata--gttccaaac-tagatatgtaaa-ttctatcttcttttttttttatccagATTGATCGCTTTGGACATTTTAAACTGTGGCATGCAGGAGGATCCATTTTAGTAGCAATTTCCTTCTCATCTGTTTTTGGTAGCTGTTTGCCTTGCAAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatgattctgggggtagatatatgaagttatgaacatgcggtttctgtttcagATGGATCGCTTTGGACATTTCAAACTGTGGCATGCAGGAGGATCTATTTTAGTGGCAATTTCCTTCTCGTCTGTTTTTGGTAGCTGTGTTCCTTGCAAAC
                                           tttctgtttc  CT-rich tract
                   atatatgaagttat  TA-rich tract