1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaccagtagtgattgctaataaaatacatgtaggtgtagcttacatatccaagcttcgttaatagaagtcataaaaccggtgaaaatataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG
species | Zea mays |
transcript | GRMZM2G121456_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|110519563|gb|EE023896.1|EE023896
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCCACCCTCTTEST: gi|74237088|gb|DT645002.1|DT645002
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACC-TCTT
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|78092088|gb|DV520462.1|DV520462
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|19821991|gb|BQ048015.1|BQ048015
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGEST: gi|71436538|gb|DR817588.1|DR817588
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCEST: gi|148939986|gb|EC884717.2|EC884717
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTC
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|32942454|gb|CF047273.1|CF047273
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|211478511|gb|FL023987.1|FL023987
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTTACAAAACTEST: gi|20208074|gb|BQ134163.1|BQ134163
genomic: CATGGGAGCTTTT-CTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTT-ACCAAACT
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|26456147|gb|CA827730.1|CA827730
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|149088221|gb|EE177331.2|EE177331
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAACTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|101399114|gb|EB821430.1|EB821430
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|78111070|gb|DV529467.1|DV529467
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|78544613|gb|DV622111.1|DV622111
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTTTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|76919121|gb|DV167599.1|DV167599
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|71427481|gb|DR808531.1|DR808531
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|71445134|gb|DR826184.1|DR826184
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|74245787|gb|DT653701.1|DT653701
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|148939985|gb|EC884716.2|EC884716
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTCCCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|78090189|gb|DV518563.1|DV518563
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|148938546|gb|EC882867.2|EC882867
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|19822147|gb|BQ048171.1|BQ048171
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCEST: gi|50338176|gb|CO533302.1|CO533302
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGC
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTTACAAAACTCAAGGATAATGATCCATCAACCTCTTEST: gi|58029811|gb|CX725238.1|CX725238
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTT-ACCAAACTCAAGGATAATGATCCATCAACCTCTT
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|101400189|gb|EB821914.1|EB821914
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|93282145|gb|EB674409.1|EB674409
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|76012850|gb|DT940020.1|DT940020
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|211478510|gb|FL023986.1|FL023986
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|93282646|gb|EB674910.1|EB674910
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCCAAG GAAAGCGATACAGCTTACCAAACEST: gi|9254470|gb|BE344938.1|BE344938
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAAC
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCTATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|148934818|gb|EC878864.2|EC878864
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAAGATAATGATCCCATCA-CCTCTTEST: gi|113702266|gb|EE679770.1|EE679770
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCC-ATCAACCTCTT
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GCAAGCTATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|101399344|gb|EB821545.1|EB821545
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|71307773|gb|DR790105.1|DR790105
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGEST: gi|26455779|gb|CA827362.1|CA827362
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
EST: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAG GAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
genomic: CATGGGAGCTTTTCTACTTAGTGCTGGGACCAAAGgtaccagtag ... tataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTG
tacatatccaagcttcgttaatagaagtcataaaaccggtgaaaatataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG
tgaaaatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccagtagtgattgctaataaaatacatgtaggtgtagcttacatatccaagcttcgttaatagaagtcataaaaccggtgaaaatataatgcagGAAAGCGATACAGCTTACCAAACTCAAGGATAATGATCCATCAACCTCTTGGAGGGGCCCAAGGACAGGAGACTGATCTTGAGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA