1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagttatatctcatattgcgcgttgttacagtcctctttttgcttgtcatttaatcactactaattgtaatatttctgcagTACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAG
species | Zea mays |
transcript | GRMZM2G121210_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTGTTTGATTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAA TACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAGEST: gi|32934519|gb|CF039331.1|CF039331
genomic: CTTGTTTGATTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAAgtgagttata ... atttctgcagTACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAG
EST: CTTGTTTGATTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAA TACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAGEST: gi|32931356|gb|CF036168.1|CF036168
genomic: CTTGTTTGATTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAAgtgagttata ... atttctgcagTACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAG
EST: CTTGTTTGATTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAA TACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAGEST: gi|166472322|gb|EG045877.1|EG045877
genomic: CTTGTTTGATTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAAgtgagttata ... atttctgcagTACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAG
EST: TTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAA TACTTGAGGAGTTCTGTCATTTAAGGACTTGAATTCTATTGTAAGAGAAAGEST: gi|32930092|gb|CF034904.1|CF034904
genomic: TTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAAgtgagttata ... atttctgcagTACTTGAGGAGTTCTGTCATTTAAGG-CTTGAATTCTATTGTAAGAGAAAG
EST: CTTGTTTGATTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAA TACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAG
genomic: CTTGTTTGATTCAGATGGTAAAATTCGGAAGTATGACACTCCCGAGCAAAgtgagttata ... atttctgcagTACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAG
tacagtcctctttttgcttgtcatttaatcactactaattgtaatatttctgcagTACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAG
tactaat putative branch site (score: 12)
tatttct putative PPT
atttaatcactactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttatatctcatattgcgcgttgttacagtcctctttttgcttgtcatttaatcactactaattgtaatatttctgcagTACTTGAGGAGTTCTGTCATTTAAGGCTTGAATTCTATTGTAAGAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA