1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gccctatatatatctgtgtgtagagagagagagatatttagtgttgggaaataaaatatttttgcctgtatctgatgttgtatctcatatatatgtgcagGTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTACAGAAAGTTTCTGAAAAG
species | Zea mays |
transcript | GRMZM2G120876_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATG GTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTAEST: gi|18660880|gb|BM501096.1|BM501096
genomic: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATGgttagtcttt ... atatgtgcagGTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTA
EST: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATG GTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTAEST: gi|211134090|gb|FL422145.1|FL422145
genomic: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATGgttagtcttt ... atatgtgcagGTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTA
EST: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATG GTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTAEST: gi|211538850|gb|FL377090.1|FL377090
genomic: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATGgttagtcttt ... atatgtgcagGTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTA
EST: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATG GTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTAEST: gi|211045137|gb|FL385512.1|FL385512
genomic: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATGgttagtcttt ... atatgtgcagGTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTA
EST: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATG GTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTWAGTTATGTA
genomic: AAAGGAAGTCTGGAGTCGGTGTTGTTGCTCGCTATGACACAAAGAAAATGgttagtcttt ... atatgtgcagGTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTA
gggaaataaaatatttttgcctgtatctgatgttgtatctcatatatatgtgcagGTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTACAGAAAGTTTCTGAAAAG
atctgat putative branch site (score: 205)
ataaaatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctatatatatctgtgtgtagagagagagagatatttagtgttgggaaataaaatatttttgcctgtatctgatgttgtatctcatatatatgtgcagGTTGCGACTGCACAAATTGCAACCACTGGAATGGTCGCGCTTAGTTATGTACAGAAAGTTTCTGAAAAG
- - - - - - - - - - - - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtt