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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcatagcattatctatttacaattgatatttattttactgttggatttcattgtatgtattgttttcagttttctcatactacttacggcaccttttcagATAATTACAACAATGCGGACTCTTTACCAAACGTGCAAACTGGTCCATGGTGATTTGAGTGAATACAATATTCTATATTTTGAG

Basic information

species Zea mays
transcript GRMZM2G120329_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120329_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g06820.1 (Oryza sativa), 3'ss of exon 7
gcatagcattatctatttacaattgatattt-----attttactgttggatttcat-tgtatgtattgttttcagttttctcatactacttacggcacctttt-cagATAATTACAACAATGCGGACTCTTTACCAAACGTGCAAACTGGTCCATGGTGATTTGAGTGAATACAATATTCTATATTTTGAG
     ||| |||  | |||   ||  |   |     |  |   |  || ||||  | ||| | ||     |||||||||| ||||     | |  |  ||||| ||| ||||||| ||||||||||| || |||||||  ||||||||||||||||||||| ||||||||||||| ||||| ||||| |||
--cctgcaatatgcacttattgttttttcgtaagggaactgtttagtgtattttttatgtgtataacaccttcagttttcccata-----tgcaacttctttttcagTTAATTACGACAATGCGGACACTCTACCAAAAATGCAAACTGGTCCATGGTGATCTGAGTGAATACAACATTCTTTATTTCGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcattgtatgtattgttttcagttttctcatactacttacggcaccttttcagATAATTACAACAATGCGGACTCTTTACCAAACGTGCAAACTGGTCCATGGTGATTTGAGTGAATACAATATTCTATATTTTGAG
                                   tacttac  putative branch site (score: 1)
                                            caccttttc  putative PPT
            tattgtttt  TA-rich tract