Sequence
atgc intronic sequence ATGC exonic sequencegtatggtagtattgctgtaattatacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtgattcttgtgtttatacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119725_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g19510.2 (Oryza sativa), 3'ss of exon 7
gtatggtagtattgctgtaattatacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtg-attcttgtg--tttatacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAG
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gtaggtaaaggttattgttattat-taatatgttatctgtgctgaatccatttgaatttttgctgtgaagtcttaatactgtatgtacttgttgttttacctaagGTGGTATGCAAAGCGGTTTTTGCATCCTGATGTTGTTGCCCGATATGACTACATATTCATCTGGGATGAGGACCTAGGTGTTGAGCATTTCAATGCAGAG
upper sequence: GRMZM2G119725_T04 (Zea mays), 3'ss of exon 7
lower sequence: AT1G08040.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatggtagtattgctgtaatt--atacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtgattcttgtgtttatacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAG
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gtaagaaatctgaaatgtaggtcagcacgatatactctaattcttctaatagtcatgaaaatttatctacaaaatcctcaccttgagctgtttatctttggcagGTGGTATGCAAAGAGATTTTTGCATCCTGATGTTGTCTCAGCTTATGAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACTTCAATGCAGAT
upper sequence: GRMZM2G119725_T04 (Zea mays), 3'ss of exon 7
lower sequence: Vv06s0004g02700.t01 (Vitis vinifera), 3'ss of exon 7
------gtatggtagtattgctgtaattatacaatgtctttttattgccctt-gtcaatataatgttttgacttcaattttattgatgtgattcttgtgtttatacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAG
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ggagagacacggcattattggctaagctg---aaactttttctgctgcagatagttaata---ctttttgtcctagtttatattcata-gattcccatg--tattgcagGTGGTATGCAAAAAGGTTCTTGCATCCTGATGTTGTTGCTGCTTATGAATATATTTTTATATGGGATGAAGACCTAGATGTAAAGCACTTCAATGGAGAG
upper sequence: GRMZM2G119725_T04 (Zea mays), 3'ss of exon 7
lower sequence: PP1S129_53V6.1 (Physcomitrella patens), 3'ss of exon 7
gtatggtagtattgctgtaattatacaatgtctttttattgcccttgtcaatataatgttttgacttc--aattttattgatgtgattcttgtgt-ttatacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAG
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-tctgattagacacccg--atccgacaataattcctggcttgtttttattttatt-ttttttgttttcggaatcggatttat-tgattattgtttgctgttatagGTGGTATGCCAAGCGGTTTTTGCACCCCGATGTAGTGGCGCCGTATGAGTACATCTTCATTTGGGATGAGGATCTTGATTTGAGGCATTTTAATCCTAAG
upper sequence: GRMZM2G119725_T04 (Zea mays), 3'ss of exon 7
lower sequence: EFJ06933 (Selaginella moellendorffii), 3'ss of exon 6
gtatggtagtattgctgtaattatacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtgat-tcttgtgttta--tacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAG
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--------------------------------------------------gtaactttcttcgggttaaaacttggccctgtcacatcctgctgttgctttctagGTGGTATGCCAAACGATTCTTGCATCCGGATGTGGTTGCGCTGTTCGACTTCATATTTATATGGGATGAAGATCTGGACTTGGAACACTTCGATGCTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211445045|gb|FL132441.1|FL132441EST: GAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATG GTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTA
genomic: GAGTGGTCTAAAAGAGCAATCCATGTGAGTGCCAGGAAGCAGACAAAATGgtatggtagt ... tttatacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaatataatgttttgacttcaattttattgatgtgattcttgtgtttatacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAG
tattgat putative branch site (score: 3)
ttcaattttattgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtatggtagtattgctgtaattatacaatgtctttttattgcccttgtcaatataatgttttgacttcaattttattgatgtgattcttgtgtttatacaagGTGGTATGCAAAACGATTTTTGCATCCCGATGTTGTTGCCAGATATGATTACATTTTCATCTGGGATGAGGATCTAGGTGTAGAGCATTTCAACGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA