1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtccgtatgactacattcgctagtggtctctgttatctcattttttccaggataacaataactatgttttttcacagGTTCATACCCTCCTAAAAGGATTGGAGAAGATAGCTGTCAGTGCAGACATTCCTATGTTGGTCTGTGGAGATTTCAACTCAACCCCTGGGAG
species | Zea mays |
transcript | GRMZM2G118467_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATACACATATAAATGTCCATCAAGACCTAAAAGATGTGAAGCTATGGGAG GTTCATACCCTCCTAAAAGGATTGGAGAAGATAGCTGTCAGTGCAGACATTEST: gi|211192150|gb|FK946799.1|FK946799
genomic: ATACACATATAAATGTCCATCAAGACCTAAAAGATGTGAAGCTATGGGAGgtccgtatga ... tttttcacagGTTCATACCCTCCTAAAAGGATTGGAGAAGATAGCTGTCAGTGCAGACATT
EST: ATACACATATAAATGTCCATCAAGACCTAAAAGATGTGAAGCTATGGGAG GTTCATACCCTCCTAAAAGGATTGGAGAAGATAGCTGTCAGTGCAGACATT
genomic: ATACACATATAAATGTCCATCAAGACCTAAAAGATGTGAAGCTATGGGAGgtccgtatga ... tttttcacagGTTCATACCCTCCTAAAAGGATTGGAGAAGATAGCTGTCAGTGCAGACATT
gtggtctctgttatctcattttttccaggataacaataactatgttttttcacagGTTCATACCCTCCTAAAAGGATTGGAGAAGATAGCTGTCAGTGCAGACATTCCTATGTTGGTCTGTGGAGATTTCAACTCAACCCCTGGGAG
caataac putative branch site (score: 118)
tgttttttc putative PPT
ataacaataactatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtatgactacattcgctagtggtctctgttatctcattttttccaggataacaataactatgttttttcacagGTTCATACCCTCCTAAAAGGATTGGAGAAGATAGCTGTCAGTGCAGACATTCCTATGTTGGTCTGTGGAGATTTCAACTCAACCCCTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT