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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gctagttaactcaacaacatgcatgtctccaagcaaaactttatgtttccggcatgtcaggaaattaagtcatgtcaatatatatataacatcaggctgtgtgttgcattgcagGTGACCTGGGTTGAGCATGTTGAGGTGGACGACAGATCAGTGCACAATCTCTACAGGCCTTTGGTGAATTCAGGCCTGGGATTTGGTGCGACAAGGTGGG

Basic information

species Zea mays
transcript GRMZM2G118063_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118063_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g08820.1 (Oryza sativa), 3'ss of exon 7
--------------------------------------------gctagt-taactcaacaacatgcatgtctc-caagcaaaactttatgtttccggcatgtcaggaaattaagtcatgtcaatatatatataacatcaggctgtgtgttgcattgcagGTGACCTGGGTTGAGCATGTTGAGGTGGACGACAGATCAGTGCACAATCTCTACAGGCCTTTGGTGAATTCAGGCCTGGGATTTGGTGCGACAAGGTGGG
                                            | ||||  |  |        | ||| | |    ||||||| || |  |     |   ||    | |||  ||  || |||  |  || | | ||      |  |||||  | | ||||||| ||||| |||||||| |||||||||||||| || ||||||||  |||||| ||| |||||||| || ||||| | ||| || |||| | ||||||
gtaattaattcaatctctatatatatatatctacaatattaaaggatagtacatattgttgttgttcatattttgtcagcaaaagttgaaatggtttgatcgttc--atattctgt--tggcaaagttaatttgaaatgtattgggttgttgtgt-gtagGTGACATGGGTGGAGCATGTGGAGGTGGACGACAGCTCGGTGCACAACATCTACAAGCCATTGGTGAACTCCGGCCTCGCATTCGGCGCGAAACGGTGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaattaagtcatgtcaatatatatataacatcaggctgtgtgttgcattgcagGTGACCTGGGTTGAGCATGTTGAGGTGGACGACAGATCAGTGCACAATCTCTACAGGCCTTTGGTGAATTCAGGCCTGGGATTTGGTGCGACAAGGTGGG
                        atataac  putative branch site (score: 3)
            atgtcaatatatatat  TA-rich tract