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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcaccatatcttaattatttgagtgaaatttactaggaatccttaaacatttcctgaactgtggaccagATTCTCACTCTGATTGAACCACTTAGAAACTTCACCCAGATCCTGAGTTTATGGACCTAGATGAGATTCAGGACAAATTCAAGGACGTCCATTCATTTCA

Basic information

species Zea mays
transcript GRMZM2G114758_T05
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60347651|gb|DN214624.1|DN214624
EST:     TTTAAGTGATGTCCCTTTTGTGAAACTACGTTGCGGTGCTCCTCGTCTCT                         ATTCTCACTCTGATTGAACCACTTAGAAACTTCACCCAGATCCTGAGTTTA
genomic: TTTAAGTGATGTCCCTTTTGTGAAACTACGTTGCGGTGCTCCTCGTCTCTgtaagatcac ... tgtggaccagATTCTCACTCTGATTGAACCACTTAGAAACTTCACCCAGATCCTGAGTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttgagtgaaatttactaggaatccttaaacatttcctgaactgtggaccagATTCTCACTCTGATTGAACCACTTAGAAACTTCACCCAGATCCTGAGTTTATGGACCTAGATGAGATTCAGGACAAATTCAAGGACGTCCATTCATTTCA
           aaatttacta  TA-rich tract