1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgatatttggccatcaatttattcttgcatttgttgactttttcagtttcagtactatatatttgcttactatttgctggaagcgttggcagttattcaattctttttattgtcttatagttcgctcagtccggtttgtattgcttacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACCCAAAATAATGATTACAGGGAAATGGAACAAGTCACTGAGCTGCCAACCA
species | Zea mays |
transcript | GRMZM2G114126_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAACCGGGGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTG-TTCGG GGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGNAAGAACCEST: gi|91055718|gb|EB166136.1|EB166136
genomic: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatt ... tacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGG GGCTGGGCGGTATGAGGTAGATGGGTATGTGTAEST: gi|67022184|gb|CO450933.1|CO450933
genomic: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatt ... tacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTA
EST: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGG GGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACCEST: gi|61118185|gb|DN559146.1|DN559146
genomic: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatt ... tacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGG GGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACCEST: gi|78120438|gb|DV538822.1|DV538822
genomic: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatt ... tacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGG GGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACCEST: gi|67032806|gb|CO461555.1|CO461555
genomic: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatt ... tacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGG GGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACCEST: gi|8367795|gb|BE050740.1|BE050740
genomic: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatt ... tacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACC
EST: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGG GGCTGGCCGGTATGAGGTGGATGGGTATGTGTACAGTGCAGAGGAAGAACC
genomic: ACAACCGGAGACAAAGCTGTGTTATATTTCCAGCCATGTGGCTGGTTCGGgtatgatatt ... tacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACC
ttctttttattgtcttatagttcgctcagtccggtttgtattgcttacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACCCAAAATAATGATTACAGGGAAATGGAACAAGTCACTGAGCTGCCAACCA
tgcttac putative branch site (score: 384)
tttattgtcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatatttggccatcaatttattcttgcatttgttgactttttcagtttcagtactatatatttgcttactatttgctggaagcgttggcagttattcaattctttttattgtcttatagttcgctcagtccggtttgtattgcttacatttcagGGCTGGCCGGTATGAGGTAGATGGGTATGTGTACAGTGCAGCGGAAGAACCCAAAATAATGATTACAGGGAAATGGAACAAGTCACTGAGCTGCCAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC