1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcctgcagtgcttgttgaattttcaattttctatctaaatctagctgctgaagtcaatgctcatgttttgtcaaagagcatgtcttaaataaggacagaaacacattactgcatcctgtgttggcccctgttttaattttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGTCCTGATGGACTTCTGATTGACGCTAATTCAGGAAAG
species | Zea mays |
transcript | GRMZM2G113726_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGTEST: gi|47961405|gb|CN844114.1|CN844114
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
EST: TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGTEST: gi|44681734|gb|CK786782.1|CK786782
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
EST: TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGTEST: gi|44682058|gb|CK787106.1|CK787106
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
EST: TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGTEST: gi|47962732|gb|CN845441.1|CN845441
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
EST: TGGAAAAATTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAAT CATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
genomic: TGGAAAAGTTTCGAATATGCAACCACTTCCATTTTGCTTGGCCTGTGAATgtaagcctgc ... ttttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGT
aggacagaaacacattactgcatcctgtgttggcccctgttttaattttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGTCCTGATGGACTTCTGATTGACGCTAATTCAGGAAAG
ttttaat putative branch site (score: 3)
ttttctgc CT-rich tract
tgttttaattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcctgcagtgcttgttgaattttcaattttctatctaaatctagctgctgaagtcaatgctcatgttttgtcaaagagcatgtcttaaataaggacagaaacacattactgcatcctgtgttggcccctgttttaattttctgcagCATACATCGTTGAGCCCAGATGGTAAACTTGCTGCTATTGTGGGGGACAGTCCTGATGGACTTCTGATTGACGCTAATTCAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA