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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcttctgctcgtgggatcatttgccctagatcccctagttttgctggttgtttttaatctaccctctcctcactttatttcctaaatttttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATCGACATTGCAGTCGATCTGTGGCGCTTTGTTCCTAACGCCCAACGCCGCA

Basic information

species Zea mays
transcript GRMZM2G113640_T03
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91874160|gb|EB404117.1|EB404117
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
EST: gi|32928356|gb|CF033168.1|CF033168
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGT
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGT
EST: gi|213171204|gb|FM188301.1|FM188301
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGTACAAGTNGCACAAGAAAAAAGAGATT
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
EST: gi|211470300|gb|FL449608.1|FL449608
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC
EST: gi|6227108|gb|AW155812.1|AW155812
EST:     AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAG                         CTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATT
genomic: AGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTCTATGCGAGgtataataag ... ttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgtttttaatctaccctctcctcactttatttcctaaatttttttttgcagCTGCGTTACAATCTACCGCGGACGTACAAGTTGCACAAGAAAAAAGAGATCGACATTGCAGTCGATCTGTGGCGCTTTGTTCCTAACGCCCAACGCCGCA
                                   tcctaaa  putative branch site (score: 2)
                 ccctctcctcacttta  CT-rich tract
                           actttatttcctaaat  TA-rich tract