1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagaaccggtgcttgtttgcgactagcagtttcctttggaagatgatatttgacattttaagtgcccatttgctactgacagGTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA
species | Zea mays |
transcript | GRMZM2G113640_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAG GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAEST: gi|211270654|gb|FL248444.1|FL248444
genomic: ACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGgtcagaaccg ... ctactgacagGTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA
EST: TCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGMAGEST: gi|71438832|gb|DR819882.1|DR819882
genomic: GTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGgtcagaaccg ... ctactgacagGTTGCTTCTCA
EST: TCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGEST: gi|213171204|gb|FM188301.1|FM188301
genomic: GTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGgtcagaaccg ... ctactgacagGTTGCTTCTCA
EST: GTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAG GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAEST: gi|76012002|gb|DT939172.1|DT939172
genomic: GTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGgtcagaaccg ... ctactgacagGTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA
EST: TCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGEST: gi|6227108|gb|AW155812.1|AW155812
genomic: GTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGgtcagaaccg ... ctactgacagGTTGCTTCTCA
EST: TCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGEST: gi|50327796|gb|CO522922.1|CO522922
genomic: GTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGgtcagaaccg ... ctactgacagG
EST: TCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAG
genomic: GTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGgtcagaaccg ... ctactgacagGTTGCTTCTCA
agtttcctttggaagatgatatttgacattttaagtgcccatttgctactgacagGTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA
atttgac putative branch site (score: 69)
atatttgacattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagaaccggtgcttgtttgcgactagcagtttcctttggaagatgatatttgacattttaagtgcccatttgctactgacagGTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG