1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtaactatgaaacatatgtatttatagtattgccacttaaaacaacagggttttcttatttatatgtaacatccaatttgctttttttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA
species | Zea mays |
transcript | GRMZM2G113619_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCC-CAAATGCGAGC-CTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|93283252|gb|EB675516.1|EB675516
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|50326768|gb|CO521894.1|CO521894
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|94472719|gb|EB701677.1|EB701677
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: TTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|60337669|gb|DN204642.1|DN204642
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CCACAAATGCGAGCACTGATGCCTTCTGCCGTTTTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|78086641|gb|DV515034.1|DV515034
genomic: CCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|93284055|gb|EB676319.1|EB676319
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|60338944|gb|DN205917.1|DN205917
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|71311804|gb|DR792363.1|DR792363
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|91877838|gb|EB407795.1|EB407795
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|71766652|gb|DR964589.1|DR964589
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATEST: gi|76280759|gb|DV020327.1|DV020327
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
EST: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTT TTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
genomic: CTGCCACAAATGCGAGCACTGCTGCCTTCTGCCGCTCTGCTGCTCTTGTTgtgagtaact ... ttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGAT
acaacagggttttcttatttatatgtaacatccaatttgctttttttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA
atgtaac putative branch site (score: 179)
tttgctttttttat putative PPT
ttttcttatttatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaactatgaaacatatgtatttatagtattgccacttaaaacaacagggttttcttatttatatgtaacatccaatttgctttttttatgttcagTTAATGGCTCTCTTATTGTTGAGACACGCACTGACTCTAACTGATGAAGATGACGACGACACTTCAGCGATGTTTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG