1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggaagtttctaggatctattagctaaattcaaagagcaaattctctattcaaggagtggtctactgagatgtttgtatttgtgctcatcttaaaccgcagGTCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTTGTAGAATATGATGGCAAGGCACTCTTGAGCTTCAAGCAGAAAAAGAAAA
species | Zea mays |
transcript | GRMZM2G113453_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGATGATCAGTTCATTTCAGCTGAAAATCTCACAGACAACCAGAAG GTCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGCTGCAAGTTEST: gi|67013340|gb|CO442089.1|CO442089
genomic: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTCACAGACAACCAGAAGgttagtgtcc ... taaaccgcagGTCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTT
EST: TTGCTGATGATCAGTTCATTTCAGCTGAAAATCTCACAGACAACCAGAAG GTCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTTEST: gi|13126419|gb|BG316989.1|BG316989
genomic: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTCACAGACAACCAGAAGgttagtgtcc ... taaaccgcagGTCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTT
EST: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTCACAGACAACCAGAAG GTCTATGCTGATGCATTGGTAAAGAAAGCATATGATGACTGGATGCAAGTT
genomic: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTCACAGACAACCAGAAGgttagtgtcc ... taaaccgcagGTCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTT
tattcaaggagtggtctactgagatgtttgtatttgtgctcatcttaaaccgcagGTCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTTGTAGAATATGATGGCAAGGCACTCTTGAGCTTCAAGCAGAAAAAGAAAA
ctcatctt CT-rich tract
tttgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaagtttctaggatctattagctaaattcaaagagcaaattctctattcaaggagtggtctactgagatgtttgtatttgtgctcatcttaaaccgcagGTCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTTGTAGAATATGATGGCAAGGCACTCTTGAGCTTCAAGCAGAAAAAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - -gagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctc