1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtttacactggaactgagtgccaattgagatctatttatttatatgtcaatatgtcaatgaatcctccattttctttctgtattttgattgttctatcattgcagGTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATTCCTGACGAGTTAAAG
species | Zea mays |
transcript | GRMZM2G113365_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTGATGCCTCAACTGAATGGAAAGAATTTACTACACCAGAAGGACGGAA GTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATCCCTGACGAEST: gi|211168721|gb|FK993043.1|FK993043
genomic: GCTGATGCCTCAACTGAATGGAAAGAATTTACTACACCAGAAGGACGGAAgtaagtttac ... atcattgcagGTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATTCCTGACGA
EST: GCTGATGCCTCAACTGAATGGAAAGAATTTACTACACCAGAAGGACGGAA GTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATCCCTGACGAEST: gi|211168722|gb|FK993044.1|FK993044
genomic: GCTGATGCCTCAACTGAATGGAAAGAATTTACTACACCAGAAGGACGGAAgtaagtttac ... atcattgcagGTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATTCCTGACGA
EST: GCTGATGCCTCAACTGAATGGAAAGAATTTACTACACCAGAAGGACGGAA GTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATCCCTGACGAEST: gi|211168723|gb|FK993045.1|FK993045
genomic: GCTGATGCCTCAACTGAATGGAAAGAATTTACTACACCAGAAGGACGGAAgtaagtttac ... atcattgcagGTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATTCCTGACGA
EST: GCTGATGCCTCAACTGAATGGAAAGAATTTACTACACCAGAAGGACGGAA GTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATCCCTGACGA
genomic: GCTGATGCCTCAACTGAATGGAAAGAATTTACTACACCAGAAGGACGGAAgtaagtttac ... atcattgcagGTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATTCCTGACGA
tatgtcaatgaatcctccattttctttctgtattttgattgttctatcattgcagGTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATTCCTGACGAGTTAAAG
ttttgat putative branch site (score: 218)
ttctatc putative PPT
tattttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttacactggaactgagtgccaattgagatctatttatttatatgtcaatatgtcaatgaatcctccattttctttctgtattttgattgttctatcattgcagGTACTATTTCAACAAAGTGACCAAGCAATCAAAATGGACTATTCCTGACGAGTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA