1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attaaaaaaggccataagttttcaacatgccatcaattcatattagatgacttacaatgattttgttgtttatcatttcctcttttctttttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACTGGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCA
species | Zea mays |
transcript | GRMZM2G111713_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGACACATCATCGCTTCGGAAAATTTTGACAGAGAGGATGCATTCT ACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACEST: gi|76923556|gb|DV169545.1|DV169545
genomic: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCTgtaaggccct ... ttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACAC
EST: ATGGAGACACATCATCGTTTTGGAAAATTCTGACAGAGAGGATGCATTCT ACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACEST: gi|4827723|gb|AI668415.1|AI668415
genomic: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCTgtaaggccct ... ttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACAC
EST: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT ACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACEST: gi|50337822|gb|CO532948.1|CO532948
genomic: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCTgtaaggccct ... ttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACAC
EST: AGGATGCATTCT ACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACEST: gi|89251080|gb|DY622866.1|DY622866
genomic: AGGATGCATTCTgtaaggccct ... ttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACAC
EST: AAATTCTGACAGAGAGGATGCATTCT TCTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACEST: gi|89248722|gb|DY620508.1|DY620508
genomic: AAATTCTGACAGAGAGGATGCATTCTgtaaggccct ... ttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACAC
EST: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT ACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACEST: gi|71420007|gb|DR804974.1|DR804974
genomic: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCTgtaaggccct ... ttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACAC
EST: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT ACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACEST: gi|211237149|gb|FL440871.1|FL440871
genomic: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCTgtaaggccct ... ttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACAC
EST: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT CCTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACAC
genomic: ATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCTgtaaggccct ... ttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACAC
gatgacttacaatgattttgttgtttatcatttcctcttttctttttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACTGGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCA
gacttac putative branch site (score: 140)
ttttgttgtttatcat putative PPT
attttgttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaaaaaaggccataagttttcaacatgccatcaattcatattagatgacttacaatgattttgttgtttatcatttcctcttttctttttggctgaagACTATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACTGGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- taaaaaa
- - - - - - - - - - - - acatgcc
- - - - - - - - - - - - - - - - - - ttcatat