1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgcccttctaaacccttacagaattagaagtgtatgatacaattttccccctttggaatgtctccgtgtctgttgacattgtttaatctacttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT
species | Zea mays |
transcript | GRMZM2G111713_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|4827723|gb|AI668415.1|AI668415
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: TCAAGCATTAAAAATAT-CAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|71443106|gb|DR824156.1|DR824156
genomic: TCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|50337823|gb|CO532949.1|CO532949
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTEST: gi|101389514|gb|EB816695.1|EB816695
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTT
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|89248722|gb|DY620508.1|DY620508
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: ATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|71420007|gb|DR804974.1|DR804974
genomic: ATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: CAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|61119623|gb|DN560584.1|DN560584
genomic: CAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|211237149|gb|FL440871.1|FL440871
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|89758224|gb|DY687488.1|DY687488
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|88758133|gb|DY542274.1|DY542274
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|166679809|gb|EG146008.1|EG146008
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|148938688|gb|EC883024.2|EC883024
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|71420010|gb|DR804975.1|DR804975
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAA-TTCTGEST: gi|148989211|gb|EE031705.2|EE031705
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGGAAATTCTGEST: gi|32913045|gb|CF017857.1|CF017857
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGEST: gi|76923558|gb|DV169546.1|DV169546
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
EST: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAG GTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
genomic: GGTATACCAAAAATCAATTCTACGATCAAGCATTAAAAATATACAAGGAGgtgcgtctta ... cttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTG
tccccctttggaatgtctccgtgtctgttgacattgtttaatctacttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT
tctactt CT-rich tract
attgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcccttctaaacccttacagaattagaagtgtatgatacaattttccccctttggaatgtctccgtgtctgttgacattgtttaatctacttgattcagGTTAACACTTTGATGGCACATGGAGACACATCATCGCTTCGGAAAATTCTGACAGAGAGGATGCATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG