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gttagtcactcacaacctggtagccttaatgtgatttatactgaatgtgtaaatgattttatgaattatgaatacagcctatgatgaataattgtgtgtaagtactgactaactactggtgcgctatgttaaatttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCTAGGGAATAAGTCTTTAAGG
species | Zea mays |
transcript | GRMZM2G110289_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAA TGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCTEST: gi|18384842|gb|BM418041.1|BM418041
genomic: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAAgttagtcact ... atttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCT
EST: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAA TGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCTEST: gi|18384843|gb|BM418042.1|BM418042
genomic: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAAgttagtcact ... atttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCT
EST: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAA TGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCTEST: gi|16746087|gb|BM032517.1|BM032517
genomic: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAAgttagtcact ... atttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCT
EST: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAA TGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCTEST: gi|18384685|gb|BM417884.1|BM417884
genomic: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAAgttagtcact ... atttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCT
EST: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAA TGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCTEST: gi|18384683|gb|BM417882.1|BM417882
genomic: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAAgttagtcact ... atttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCT
EST: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAA TGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCTEST: gi|16745974|gb|BM032404.1|BM032404
genomic: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAAgttagtcact ... atttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCT
EST: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAA TGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCT
genomic: ATTGCAGAAGCCCTTTTAGAGAATAATACGATACGGAGCTTGTATCTCAAgttagtcact ... atttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCT
ataattgtgtgtaagtactgactaactactggtgcgctatgttaaatttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCTAGGGAATAAGTCTTTAAGG
gactaac putative branch site (score: 139)
tttctct putative PPT
tatgttaaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtcactcacaacctggtagccttaatgtgatttatactgaatgtgtaaatgattttatgaattatgaatacagcctatgatgaataattgtgtgtaagtactgactaactactggtgcgctatgttaaatttctctagTGGCAACTATGGTGGTCCCCTTGGTGCATGCAGCCTAGCTCAAGGAATTCTAGGGAATAAGTCTTTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA