1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ggctgtgaatccgtaaaaggttcatccagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAATTGGTGGTGCTCGTTTTGATGATGGGGTTGGTGGTGACAATGAGGTGC
species | Zea mays |
transcript | GRMZM2G110185_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTT-C--------C-AG ATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAEST: gi|78085798|gb|DV514191.1|DV514191
genomic: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATATCTAGggctgtgaat ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
EST: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTT-C--------C-AG ATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAEST: gi|60350973|gb|DN217946.1|DN217946
genomic: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATATCTAGggctgtgaat ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
EST: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATATCTAG ATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAEST: gi|29129891|gb|CB380595.1|CB380595
genomic: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATATCTAGggctgtgaat ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
EST: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTT-C--------C-AG ATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAEST: gi|60344174|gb|DN211147.1|DN211147
genomic: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATATCTAGggctgtgaat ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
EST: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTT-C--------C-AG ATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAEST: gi|33104358|gb|CF064318.1|CF064318
genomic: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATATCTAGggctgtgaat ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
EST: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTT-C--------C-AG ATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAEST: gi|60398345|gb|DN231161.1|DN231161
genomic: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATATCTAGggctgtgaat ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
EST: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTT-C--------C-AG ATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
genomic: TGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGTATATCTAGggctgtgaat ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
cagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAATTGGTGGTGCTCGTTTTGATGATGGGGTTGGTGGTGACAATGAGGTGC
tgttaat putative branch site (score: 3)
ttctatt putative PPT
ttaatatttctgaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctgtgaatccgtaaaaggttcatccagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAATTGGTGGTGCTCGTTTTGATGATGGGGTTGGTGGTGACAATGAGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG