1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatatctagggctgtgaatccgtaaaaggttcatccagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAATTGGTGGTGCTCGTTTTGATGATGGGGTTGGTGGTGACAATGAGGTGC
species | Zea mays |
transcript | GRMZM2G110185_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTCGGATGGTCAGGGAACTGTTCCAG ATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAEST: gi|211399668|gb|FL004442.1|FL004442
genomic: GCTCGGATGGTCAGGGAACTGTTCCAGgtatatctag ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
EST: TTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAG ATGGCCCGCTCAA-GAAGGCATGCATTGTATTCTTTGATGAAGT-GATGEST: gi|211285323|gb|FL004422.1|FL004422
genomic: TTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGgtatatctag ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATG
EST: TTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAG ATGGCCCGCTCAAAGAAGGCATGCATTGTAEST: gi|211283515|gb|FL004410.1|FL004410
genomic: TTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGgtatatctag ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTA
EST: CAGAAGTATGTTGGGAGAAGGTGCTCGGATGGTCAGGGGAACTGTTCCAG ATGGCCCGCTCAAAGAAGGGATGCATTGTATTCCTTTGAATGA-GTTGAEST: gi|67028224|gb|CO456973.1|CO456973
genomic: CAGAAGTATGTTGG-AGAAGGTGCTCGGATGGTCAGGG-AACTGTTCCAGgtatatctag ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTC-TTTGA-TGAAGTTGA
EST: TTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAG ATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAEST: gi|19436438|gb|BM952848.1|BM952848
genomic: TTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGgtatatctag ... tctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCA
EST: TTCAGAAGTATGCTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAG ATGGCCCGCTCAAAGAAGGCATGC
genomic: TTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGgtatatctag ... tctattgtagATGGCCCGCTCAAAGAAGGCATGC
cagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAATTGGTGGTGCTCGTTTTGATGATGGGGTTGGTGGTGACAATGAGGTGC
tgttaat putative branch site (score: 3)
ttctatt putative PPT
ttaatatttctgaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatctagggctgtgaatccgtaaaaggttcatccagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtagATGGCCCGCTCAAAGAAGGCATGCATTGTATTCTTTGATGAAGTTGATGCAATTGGTGGTGCTCGTTTTGATGATGGGGTTGGTGGTGACAATGAGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG