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gtaagtaacttgttatttcgtgtttttttccattgaagtgagaatatcgatgctttatatcattacatgttacttggatcatgttatgttcacaagggaatctaatgatttaattactgacatcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG
species | Zea mays |
transcript | GRMZM2G109383_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGAATACATAAAGTTAATGGA GTTCA-TTTTTGACTTCGAAEST: gi|31349456|gb|CD433813.1|CD433813
genomic: TT-GATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGA-CAATTTTTGACTTCGAA
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|31355827|gb|CD440184.1|CD440184
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCEST: gi|211126281|gb|FL366445.1|FL366445
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCC
EST: TTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGT-AATGGAA GACA-TTTTTGACTTCGAAGCAATAAAAA-GCTGCTGACCTCCCCAAAGTEST: gi|211213801|gb|FL354211.1|FL354211
genomic: TTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATG-AAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGT-AATGAA GACAGTTTTTGACTTCGAAAGCA-TAAAAAAEST: gi|67035308|gb|CO463841.1|CO463841
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAAA
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAAGCA-TAAAAA-GCTGCTGACCTCCC-AA-GTEST: gi|211446296|gb|FL306989.1|FL306989
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAAAGCTGCTGACCTCCCCAAAGT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTA-TGAA GTCAATTTTTGACTTCGAAGCA-TAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|60351626|gb|DN218599.1|DN218599
genomic: TT-GATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|149013083|gb|EE042782.2|EE042782
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|211001599|gb|FL335869.1|FL335869
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAAGCA-TAAAAA-GCTGCTGACCEST: gi|67025909|gb|CO454658.1|CO454658
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAAAGCTGCTGACC
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|148945839|gb|EC891128.2|EC891128
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTEST: gi|31353391|gb|CD437748.1|CD437748
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|211153939|gb|FL327667.1|FL327667
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGAATACATAAAGTTAATGAA GACAATTTTTGACEST: gi|211258211|gb|FL352267.1|FL352267
genomic: TT-GATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGAC
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAEST: gi|60351436|gb|DN218409.1|DN218409
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAA
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|31353888|gb|CD438245.1|CD438245
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|149109221|gb|EE190083.2|EE190083
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAAGCA-TAAAAAAGCTGCTGACCTCCCCAA-GTEST: gi|149017022|gb|EE045668.2|EE045668
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAAAGCTGCTGACCTCCCCAAAGT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|67025687|gb|CO454436.1|CO454436
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTATTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GGACATTTTTTEST: gi|31356494|gb|CD440851.1|CD440851
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagG-ACAATTTTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|67041650|gb|CO467905.1|CO467905
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|211040466|gb|FL323564.1|FL323564
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAAGT-AATGAA GACAATTTTTGACTTCGAAAGCA-TAAAAAEST: gi|84980113|gb|DW530462.1|DW530462
genomic: TTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAA-GTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAA
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|148945380|gb|EC890603.2|EC890603
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTEST: gi|211101215|gb|FL335616.1|FL335616
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAAGTEST: gi|149099504|gb|EE185542.2|EE185542
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAA-GT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAA-GCTGCTGACCCTCCCCAA-GTEST: gi|149014023|gb|EE043541.2|EE043541
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACC-TCCCCAAAGT
EST: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
atcatgttatgttcacaagggaatctaatgatttaattactgacatcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG
tactgac putative branch site (score: 1)
aatctaatgatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacttgttatttcgtgtttttttccattgaagtgagaatatcgatgctttatatcattacatgttacttggatcatgttatgttcacaagggaatctaatgatttaattactgacatcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTTTACATTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT