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gtaaatatgttatggatagcaaatattctactgcgtcattactgtgctcttgttgaatctgaaccattgtttttctagGAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAGTCTGAAGTCCGCAACTGGTGCTTTCAGATATTTCAGGCTCTTGCTTACA
species | Zea mays |
transcript | GRMZM2G108829_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATG GAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAGEST: gi|31350422|gb|CD434779.1|CD434779
genomic: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgt ... gtttttctagGAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAG
EST: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATG GAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAGEST: gi|47961778|gb|CN844487.1|CN844487
genomic: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgt ... gtttttctagGAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAG
EST: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATG GAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAGEST: gi|67011156|gb|CO439905.1|CO439905
genomic: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgt ... gtttttctagGAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAG
EST: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATG GAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAGEST: gi|211496285|gb|FL041697.1|FL041697
genomic: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgt ... gtttttctagGAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAG
EST: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATG GAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAG
genomic: AAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgt ... gtttttctagGAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAG
tattctactgcgtcattactgtgctcttgttgaatctgaaccattgtttttctagGAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAGTCTGAAGTCCGCAACTGGTGCTTTCAGATATTTCAGGCTCTTGCTTACA
ttgtttttct CT-rich tract
attgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatgttatggatagcaaatattctactgcgtcattactgtgctcttgttgaatctgaaccattgtttttctagGAGTGTAATCTCTACCAACTTATGAAGGATAAGGTCAAGCCTTTCTCGGAGTCTGAAGTCCGCAACTGGTGCTTTCAGATATTTCAGGCTCTTGCTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG