1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aacaataaatagtcagatgttatctacctagtcaacattattatgcaggtttaactttttgctgtagtaactagtaatatatgtttttcggtgaaaccagGACTTCAAATATGAGGAGAACTCCAAAAAAGCAGTACAATGCTTGAACAATATGGTGACTGATGCACTGATTCATGCTGAAGAGTGCCTTCAGTACATGT
species | Zea mays |
transcript | GRMZM2G108225_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTTGAG GACTTCAAATATGAGGAGAACTCCAAAAAAGCAGTACAAATGCTTGAACAAEST: gi|28930993|gb|CB334354.1|CB334354
genomic: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTTGAGgtacacaaaa ... gtgaaaccagGACTTCAAATATGAGGAGAACTCCAAAAAAGCAGTACAA-TGCTTGAACAA
EST: CTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTTGAG GACTTCAAATATGAGGAGAACTCCAAAAAAGCAGTACAATGCTTGAACAATEST: gi|149010292|gb|EE042121.2|EE042121
genomic: CTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTTGAGgtacacaaaa ... gtgaaaccagGACTTCAAATATGAGGAGAACTCCAAAAAAGCAGTACAATGCTTGAACAAT
EST: CATGTTCTGGCCTCGAGAGATATGGGAGTAA-TATGCAGATAAACTTGAG GACTTCAAATATGAGGGAGA-CTCCCAAAAAGCAGTACAATGCTTGAACAAEST: gi|9953064|gb|BE639647.1|BE639647
genomic: CATGTTCTGGCCTCGAGAGATATGG-AGTAAATATGCAGATAAACTTGAGgtacacaaaa ... gtgaaaccagGACTTCAAATATGAGG-AGAACTCCAAAAAAGCAGTACAATGCTTGAACAA
EST: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTTGAG GACTTCAAATATGAGGAGAACTCCAAAAAAGCAGTACAATGCTTGAACAATEST: gi|148940819|gb|EC885646.2|EC885646
genomic: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTTGAGgtacacaaaa ... gtgaaaccagGACTTCAAATATGAGGAGAACTCCAAAAAAGCAGTACAATGCTTGAACAAT
EST: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTTGAG GACTTTCAA-TATGAGGGAGA-CTCCAAAAA-GCAGTACAATGCT
genomic: GCATGTTCTGGCCTCGAGAGATATGGAGTAAATATGCAGATAAACTTGAGgtacacaaaa ... gtgaaaccagGACTT-CAAATATGAGG-AGAACTCCAAAAAAGCAGTACAATGCT
caggtttaactttttgctgtagtaactagtaatatatgtttttcggtgaaaccagGACTTCAAATATGAGGAGAACTCCAAAAAAGCAGTACAATGCTTGAACAATATGGTGACTGATGCACTGATTCATGCTGAAGAGTGCCTTCAGTACATGT
tagtaac putative branch site (score: 195)
taactagtaatatatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaataaatagtcagatgttatctacctagtcaacattattatgcaggtttaactttttgctgtagtaactagtaatatatgtttttcggtgaaaccagGACTTCAAATATGAGGAGAACTCCAAAAAAGCAGTACAATGCTTGAACAATATGGTGACTGATGCACTGATTCATGCTGAAGAGTGCCTTCAGTACATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- caataaa
- - - - - - - - - - - - - - - - - - - - - atgcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttt