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gttgacagctcaaaatagaaaatacatcatctgattatgatatatgatagatatgtacaagttccttttttttttgcttgtatgtctaagtttaagttttagctcttatttatcaaattgtcatgatatttctgtagGGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATAC
species | Zea mays |
transcript | GRMZM2G107731_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACAGAACATGCGTACGGAAATGTCTGAAAAATTTGATCATGCCATAAAG GGTGTCAGTGCCAAACTTGAGEST: gi|149081200|gb|EE170309.2|EE170309
genomic: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAGgttgacagct ... atttctgtagGGTGTCAGTGCCAAACTTGAG
EST: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAG GGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAEST: gi|149027108|gb|EE046399.2|EE046399
genomic: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAGgttgacagct ... atttctgtagGGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTA
EST: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAG GGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAEST: gi|213169996|gb|FM189145.1|FM189145
genomic: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAGgttgacagct ... atttctgtagGGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTA
EST: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAG GGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAEST: gi|32931571|gb|CF036383.1|CF036383
genomic: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAGgttgacagct ... atttctgtagGGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTA
EST: GTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAG GGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAEST: gi|31354731|gb|CD439088.1|CD439088
genomic: GTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAGgttgacagct ... atttctgtagGGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTA
EST: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAG GGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAEST: gi|60358220|gb|DN225193.1|DN225193
genomic: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAGgttgacagct ... atttctgtagGGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTA
EST: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAG GGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAEST: gi|91055771|gb|EB166189.1|EB166189
genomic: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAGgttgacagct ... atttctgtagGGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTA
EST: GACAGAACATGCGTACGGAATTGTCTGAAAAATT-GATCATGCCATAA-G GGTGTCAGTGCCAAACTTGA
genomic: GACAGAACATGCGTACGGAATTGTCTGAAAAATTTGATCATGCCATAAAGgttgacagct ... atttctgtagGGTGTCAGTGCCAAACTTGA
tgtctaagtttaagttttagctcttatttatcaaattgtcatgatatttctgtagGGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATAC
tatttct CT-rich tract
tcttatttatcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgacagctcaaaatagaaaatacatcatctgattatgatatatgatagatatgtacaagttccttttttttttgcttgtatgtctaagtttaagttttagctcttatttatcaaattgtcatgatatttctgtagGGTGTCAGTGCCAAACTTGAGGAGCAGAGAGTTGAGCGCATTTCTCAGCTAGAAGAGAACAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA